Detailed information NTG0814172

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QBJ73_RS08770
• Genome accession: NZ_CP121776
• Coordinates: 1845711..1846571 (-)
• Length: 286 a.a.
• NCBI ID: WP_010325766.1
• Uniprot ID: A0AAJ6ICQ0
• Organism: Acinetobacter johnsonii strain AYTCM
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1840711..1851571

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QBJ73_RS08745 (QBJ73_08750)	recN	1840872..1842533 (-)	1662	WP_010325763.1	DNA repair protein RecN	-
QBJ73_RS08750 (QBJ73_08755)	-	1842925..1843248 (+)	324	WP_004692718.1	pyrimidine/purine nucleoside phosphorylase	-
QBJ73_RS08755 (QBJ73_08760)	rlmB	1843391..1844140 (+)	750	WP_004692717.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
QBJ73_RS08760 (QBJ73_08765)	-	1844173..1845090 (+)	918	WP_029574926.1	DMT family transporter	-
QBJ73_RS08765 (QBJ73_08770)	coaE	1845105..1845704 (-)	600	WP_010325765.1	dephospho-CoA kinase	-
QBJ73_RS08770 (QBJ73_08775)	pilD	1845711..1846571 (-)	861	WP_010325766.1	A24 family peptidase	Machinery gene
QBJ73_RS08775 (QBJ73_08780)	pilC	1846571..1847797 (-)	1227	WP_010325767.1	type II secretion system F family protein	Machinery gene
QBJ73_RS08780 (QBJ73_08785)	pilB	1847828..1849540 (-)	1713	WP_308469424.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QBJ73_RS08785 (QBJ73_08790)	tpiA	1849820..1850611 (+)	792	WP_010325769.1	triose-phosphate isomerase	-
QBJ73_RS08790 (QBJ73_08795)	secG	1850625..1850954 (+)	330	WP_004692710.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31939.35 Da
• Isoelectric Point: 8.2623

>NTDB_id=814172 QBJ73_RS08770 WP_010325766.1 1845711..1846571(-) (pilD) [Acinetobacter johnsonii strain AYTCM]
MQEIISYLINTPMALYFAVGVFSLCIGSFLNVVIYRTPKMMEQEWRTDCQLLIHPEQPIIDETKLSLSKPASTCPKCKSA
IRWYQNVPVISWLLLRGKCGTCHNPISIRYPAIELLTAICALVVVAVFGPTIQMLFGLVLTYILITLTFIDFDTQLLPDR
YTLTLAGLGLGVNSYAIYTTPTAAIWGYIIGFLCLWIVYYLFKLITGKEGMGYGDFKLLAALGAWMGPLLLPLIVLLSSF
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKIYLGN

Nucleotide

• Length: 861 bp

>NTDB_id=814172 QBJ73_RS08770 WP_010325766.1 1845711..1846571(-) (pilD) [Acinetobacter johnsonii strain AYTCM]
ATGCAAGAAATAATTTCCTATCTTATCAATACTCCAATGGCGCTTTATTTCGCCGTTGGAGTTTTTAGTTTGTGCATTGG
TAGTTTCCTGAATGTAGTGATCTATCGCACGCCAAAAATGATGGAACAAGAATGGCGCACCGACTGCCAACTTCTGATTC
ATCCTGAACAGCCTATTATTGATGAAACGAAACTCTCGTTGAGCAAGCCTGCCTCGACCTGCCCCAAATGCAAAAGTGCC
ATACGCTGGTATCAAAATGTCCCTGTAATTAGCTGGTTACTGCTACGAGGAAAGTGTGGCACTTGTCATAACCCGATCAG
CATTCGCTACCCTGCGATTGAACTCCTGACCGCCATTTGTGCATTGGTCGTGGTTGCAGTCTTTGGTCCAACAATCCAAA
TGCTGTTCGGTCTCGTACTCACTTACATTTTAATCACCTTAACTTTTATTGATTTTGACACTCAACTTTTACCTGATCGC
TATACCCTCACCCTTGCAGGTCTGGGTTTAGGGGTCAATAGTTATGCGATTTACACCACACCGACAGCGGCCATTTGGGG
TTACATCATTGGTTTCTTATGCTTATGGATTGTCTACTATCTGTTTAAGCTCATCACAGGCAAGGAAGGTATGGGTTATG
GTGACTTTAAGTTACTTGCTGCTTTAGGCGCATGGATGGGTCCTTTGCTACTACCACTGATTGTGCTACTTTCTTCTTTC
GTAGGCGCCATTATCGGCATCATCCTGCTCAAAGTCCGTAAAGAAAATCAGCCTTTTGCTTTTGGTCCGTATATTGCCAT
CGCAGGATGGATTGCCTTTTTGTGGGGTGAGCAAATTATGAAAATATACTTAGGCAATTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	78.947	99.65	0.787
pilD	Acinetobacter nosocomialis M2	78.947	99.65	0.787
pilD	Vibrio cholerae strain A1552	53.731	93.706	0.503
pilD	Vibrio campbellii strain DS40M4	51.685	93.357	0.483
pilD	Neisseria gonorrhoeae MS11	45.788	95.455	0.437