Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   QA712_RS09650 Genome accession   NZ_CP121539
Coordinates   1803140..1803529 (+) Length   129 a.a.
NCBI ID   WP_372757071.1    Uniprot ID   -
Organism   Lactococcus lactis strain MA5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1803140..1809641 1803140..1803529 within 0


Gene organization within MGE regions


Location: 1803140..1809641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA712_RS09650 (QA712_09650) ssbB 1803140..1803529 (+) 390 WP_372757071.1 single-stranded DNA-binding protein Machinery gene
  QA712_RS09655 (QA712_09655) groES 1803649..1803933 (+) 285 WP_003131589.1 co-chaperone GroES -
  QA712_RS09660 (QA712_09660) groL 1804021..1805649 (+) 1629 WP_372757073.1 chaperonin GroEL -
  QA712_RS09665 (QA712_09665) - 1805696..1806508 (-) 813 WP_003131583.1 MBL fold metallo-hydrolase -
  QA712_RS09670 (QA712_09670) - 1806692..1808134 (-) 1443 WP_047205663.1 cell wall metabolism sensor histidine kinase WalK -
  QA712_RS09675 (QA712_09675) yycF 1808127..1808828 (-) 702 WP_003131580.1 response regulator YycF -
  QA712_RS09680 (QA712_09680) tmk 1809006..1809641 (+) 636 WP_015425847.1 dTMP kinase -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14742.83 Da        Isoelectric Point: 7.0193

>NTDB_id=812885 QA712_RS09650 WP_372757071.1 1803140..1803529(+) (ssbB) [Lactococcus lactis strain MA5]
MNKTMLIGRLTSAPEISKTINDKSYVRVTLAVNRRFKNEKGEREADFISIIIWGKSAETLVSYAKKGSLISIEGEIRTRN
YTDKQNQKHYVTEILGLSYDLLESRETIALRESAIKTEETLLDAEELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=812885 QA712_RS09650 WP_372757071.1 1803140..1803529(+) (ssbB) [Lactococcus lactis strain MA5]
ATGAATAAAACCATGTTAATTGGACGCTTAACCAGTGCGCCAGAAATTTCAAAAACAATAAATGATAAATCATATGTCCG
TGTGACCTTAGCAGTCAATCGCCGTTTCAAAAATGAAAAAGGAGAACGAGAGGCAGATTTTATTTCAATTATTATTTGGG
GAAAATCTGCAGAAACTTTAGTTTCTTACGCAAAAAAAGGAAGTCTTATTTCAATTGAAGGAGAAATTAGAACTAGAAAT
TATACGGATAAGCAAAATCAAAAACATTATGTCACAGAAATCTTAGGACTGAGTTATGATTTACTTGAAAGTAGGGAAAC
AATCGCTTTACGAGAAAGCGCTATAAAGACTGAAGAAACCTTACTTGATGCGGAAGAACTCCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

89.147

100

0.891
  ssbB Streptococcus sobrinus strain NIDR 6715-7

60

100

0.605
  ssbB/cilA Streptococcus pneumoniae TIGR4

56.154

100

0.566
  ssbB/cilA Streptococcus mitis NCTC 12261

55.385

100

0.558
  ssbB/cilA Streptococcus pneumoniae R6

55.385

100

0.558
  ssbB/cilA Streptococcus pneumoniae Rx1

55.385

100

0.558
  ssbB/cilA Streptococcus pneumoniae D39

55.385

100

0.558
  ssbB/cilA Streptococcus mitis SK321

55.385

100

0.558
  ssbA Streptococcus mutans UA159

54.615

100

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

43.75

86.822

0.38
  ssbA Bacillus subtilis subsp. subtilis str. 168

44.762

81.395

0.364