Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PSm6_RS15740 Genome accession   NZ_AP023081
Coordinates   3457682..3458902 (-) Length   406 a.a.
NCBI ID   WP_265167709.1    Uniprot ID   -
Organism   Pseudomonas solani strain Sm006     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3454527..3463043 3457682..3458902 within 0


Gene organization within MGE regions


Location: 3454527..3463043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSm6_RS15710 (PSm6_31560) - 3454527..3454994 (+) 468 WP_265167703.1 FAD/FMN-containing dehydrogenase -
  PSm6_RS15715 (PSm6_31570) - 3454991..3455677 (+) 687 WP_265167704.1 energy-coupling factor ABC transporter permease -
  PSm6_RS15720 (PSm6_31580) - 3455785..3456000 (+) 216 WP_265167705.1 hypothetical protein -
  PSm6_RS15725 (PSm6_31590) yacG 3456004..3456204 (-) 201 WP_265167706.1 DNA gyrase inhibitor YacG -
  PSm6_RS15730 (PSm6_31600) coaE 3456201..3456812 (-) 612 WP_265167707.1 dephospho-CoA kinase -
  PSm6_RS15735 (PSm6_31610) pilD 3456812..3457681 (-) 870 WP_265167708.1 A24 family peptidase Machinery gene
  PSm6_RS15740 (PSm6_31620) pilC 3457682..3458902 (-) 1221 WP_265167709.1 type II secretion system F family protein Machinery gene
  PSm6_RS15745 (PSm6_31630) pilB 3458906..3460609 (-) 1704 WP_265167710.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PSm6_RS15750 (PSm6_31640) pilA 3460735..3461160 (-) 426 WP_265167711.1 pilin Machinery gene
  PSm6_RS15755 - 3461316..3463043 (+) 1728 WP_265167712.1 Wzy polymerase domain-containing protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44068.78 Da        Isoelectric Point: 9.9543

>NTDB_id=81215 PSm6_RS15740 WP_265167709.1 3457682..3458902(-) (pilC) [Pseudomonas solani strain Sm006]
MAEKALKASVFKWEGTDKKGTKVTGEISGTNPALVKAQLRKQGINPLKVRKKAASLFSAGKKVKPLDIALFTRQMATMMK
AGVPLLQSFDIIGEGFENPNMRKLVDEVKQEVAAGNSFANSLRKKPMYFDDLYCNLVDSGEQSGALETLLDRVATYKEKT
EQLKAKIKKAMTYPIAVLLVAVIVSAILLIKVVPQFRDVFKGFGAELPAFTQMVVNLSEALQTWGFLILIAAFGIIFGIG
QFYKRSQKFRDTVDRGVLKMPIVGDIVYKSSVARYARTLSTTFAAGVPLVDALDSVSGATGNVVFKNAVGRIKQDVSTGM
QLNFSMRSTGVFPSMAIQMTAIGEESGALDTMLDKVASFYEEEVDNAVDNLTTLMEPLIMAVLGVLVGGLIIAMYLPIFQ
LGSVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=81215 PSm6_RS15740 WP_265167709.1 3457682..3458902(-) (pilC) [Pseudomonas solani strain Sm006]
ATGGCGGAAAAAGCACTAAAAGCGAGTGTCTTCAAATGGGAAGGCACCGACAAGAAAGGTACCAAGGTCACTGGTGAAAT
CAGCGGCACAAACCCGGCGCTGGTGAAGGCACAGCTCCGCAAGCAGGGTATCAACCCGCTCAAGGTACGCAAAAAGGCGG
CATCCCTTTTCAGCGCCGGCAAGAAAGTCAAGCCGCTGGATATCGCCTTGTTCACCCGGCAGATGGCTACGATGATGAAG
GCCGGCGTTCCGCTATTGCAAAGCTTCGACATCATCGGTGAAGGTTTCGAAAACCCCAACATGCGCAAGCTGGTGGATGA
AGTGAAACAGGAAGTGGCAGCAGGCAACAGTTTCGCCAACTCTCTGCGCAAGAAACCCATGTATTTCGATGACCTGTACT
GCAATCTGGTCGATTCCGGTGAGCAGTCCGGTGCGTTGGAAACGCTTTTGGACCGAGTCGCGACCTATAAAGAGAAGACC
GAACAGCTAAAAGCCAAGATCAAGAAGGCCATGACCTACCCGATCGCAGTTTTACTCGTTGCGGTCATCGTGTCAGCCAT
CTTGCTGATCAAGGTCGTGCCGCAGTTCCGGGACGTTTTCAAAGGTTTTGGCGCAGAGCTGCCTGCATTTACCCAAATGG
TCGTGAACCTTTCCGAAGCGCTTCAAACTTGGGGGTTCCTCATACTAATCGCCGCATTCGGAATCATTTTTGGTATCGGC
CAATTCTACAAGCGCTCACAGAAATTCCGAGACACTGTAGATAGAGGTGTACTAAAAATGCCCATCGTCGGTGATATTGT
TTACAAGTCGTCTGTAGCTCGTTATGCCCGTACACTGTCAACTACATTCGCAGCTGGTGTTCCGCTGGTGGATGCATTGG
ACTCCGTTTCCGGCGCCACCGGCAACGTCGTGTTCAAGAACGCAGTCGGCAGGATCAAACAGGACGTATCCACCGGCATG
CAGTTGAACTTCTCCATGCGCAGTACTGGTGTGTTCCCCTCAATGGCCATTCAAATGACAGCCATTGGCGAAGAGTCCGG
CGCGCTCGATACCATGCTCGACAAGGTCGCCTCGTTCTATGAAGAAGAAGTCGATAACGCCGTCGATAACCTGACCACGC
TGATGGAGCCTCTGATCATGGCGGTCCTCGGTGTTCTGGTCGGCGGCCTGATCATCGCGATGTACCTGCCTATCTTCCAG
CTCGGTTCGGTAGTGGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

79.753

99.754

0.796
  pilC Acinetobacter baylyi ADP1

61.576

100

0.616
  pilC Acinetobacter baumannii D1279779

60.988

99.754

0.608
  pilC Legionella pneumophila strain ERS1305867

53.03

97.537

0.517
  pilG Neisseria gonorrhoeae MS11

44.776

99.015

0.443
  pilG Neisseria meningitidis 44/76-A

44.417

99.261

0.441
  pilC Vibrio cholerae strain A1552

43.103

100

0.431
  pilC Vibrio campbellii strain DS40M4

42.569

97.783

0.416
  pilC Thermus thermophilus HB27

37.75

98.522

0.372

Multiple sequence alignment