Detailed information NTG0081214

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PSm6_RS15735
• Genome accession: NZ_AP023081
• Coordinates: 3456812..3457681 (-)
• Length: 289 a.a.
• NCBI ID: WP_265167708.1
• Uniprot ID: -
• Organism: Pseudomonas solani strain Sm006
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	3454527..3463043	3456812..3457681	within	0

Gene organization within MGE regions

Location: 3454527..3463043

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSm6_RS15710 (PSm6_31560)	-	3454527..3454994 (+)	468	WP_265167703.1	FAD/FMN-containing dehydrogenase	-
PSm6_RS15715 (PSm6_31570)	-	3454991..3455677 (+)	687	WP_265167704.1	energy-coupling factor ABC transporter permease	-
PSm6_RS15720 (PSm6_31580)	-	3455785..3456000 (+)	216	WP_265167705.1	hypothetical protein	-
PSm6_RS15725 (PSm6_31590)	yacG	3456004..3456204 (-)	201	WP_265167706.1	DNA gyrase inhibitor YacG	-
PSm6_RS15730 (PSm6_31600)	coaE	3456201..3456812 (-)	612	WP_265167707.1	dephospho-CoA kinase	-
PSm6_RS15735 (PSm6_31610)	pilD	3456812..3457681 (-)	870	WP_265167708.1	A24 family peptidase	Machinery gene
PSm6_RS15740 (PSm6_31620)	pilC	3457682..3458902 (-)	1221	WP_265167709.1	type II secretion system F family protein	Machinery gene
PSm6_RS15745 (PSm6_31630)	pilB	3458906..3460609 (-)	1704	WP_265167710.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PSm6_RS15750 (PSm6_31640)	pilA	3460735..3461160 (-)	426	WP_265167711.1	pilin	Machinery gene
PSm6_RS15755	-	3461316..3463043 (+)	1728	WP_265167712.1	Wzy polymerase domain-containing protein	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31760.71 Da
• Isoelectric Point: 6.6206

>NTDB_id=81214 PSm6_RS15735 WP_265167708.1 3456812..3457681(-) (pilD) [Pseudomonas solani strain Sm006]
MTVIDFLAGNLPAFVFCIFLLGLLVGSFLNVVIYRLPVMMFRDWKAQAREALELPAEPKVDTFNLILPNSRCPHCSHEIQ
AWENIPVVSWLALGGKCSSCKAPIKKRYPLVELACGLLSAYVAWHFGFTWQAGAFLVLTWGLLAMSMIDVDHQLLPDSLV
LPLLWLGLILNNQGMFATPSDALWGAVGGYLSLWSVYWVFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSLVG
AVLGIIILKLRDADSGTPIPFGPYLAIAGWIALLWGDQITGTYLHFAGF

Nucleotide

• Length: 870 bp

>NTDB_id=81214 PSm6_RS15735 WP_265167708.1 3456812..3457681(-) (pilD) [Pseudomonas solani strain Sm006]
GTGACCGTCATCGACTTCCTGGCCGGCAATTTGCCGGCCTTTGTTTTCTGCATCTTCCTACTAGGCCTTCTCGTCGGCAG
CTTCCTCAACGTCGTCATCTACCGCTTGCCGGTGATGATGTTCCGTGACTGGAAGGCGCAGGCTCGGGAGGCGTTGGAGC
TTCCGGCGGAGCCCAAGGTCGATACCTTCAACCTGATCCTGCCGAACTCGCGCTGCCCCCATTGCAGCCACGAGATCCAG
GCCTGGGAGAACATCCCCGTGGTCAGCTGGCTGGCCTTGGGTGGCAAGTGCTCGTCGTGCAAGGCACCGATCAAGAAGCG
CTACCCGCTGGTGGAACTGGCGTGCGGCCTGTTGTCGGCTTATGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCCGGGG
CGTTCCTGGTGCTGACCTGGGGCCTGCTGGCGATGAGCATGATCGACGTCGACCACCAGTTGCTGCCGGATTCCCTGGTA
CTGCCGCTGCTGTGGCTTGGCCTGATCCTCAACAACCAGGGCATGTTCGCCACGCCCAGCGATGCGCTCTGGGGCGCGGT
GGGCGGCTATCTCAGCCTCTGGTCGGTGTATTGGGTGTTCAAGCTGGTGACCGGCAAGGAAGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCGATGCTCGGTGCCTGGGGTGGCTGGCAGGTGTTGCCGCTGACCATCCTGCTGTCGTCCCTGGTGGGC
GCGGTGCTGGGGATCATCATCCTCAAGCTGCGTGATGCCGACAGCGGCACGCCCATCCCCTTCGGCCCCTACCTGGCGAT
TGCCGGCTGGATTGCATTGCTCTGGGGTGATCAAATAACCGGGACCTATCTCCACTTCGCCGGTTTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	52.465	98.27	0.516
pilD	Acinetobacter nosocomialis M2	52.113	98.27	0.512
pilD	Vibrio cholerae strain A1552	55.639	92.042	0.512
pilD	Vibrio campbellii strain DS40M4	52.381	94.464	0.495
pilD	Neisseria gonorrhoeae MS11	51.341	90.311	0.464