Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   P3S51_RS01560 Genome accession   NZ_CP121303
Coordinates   319698..320924 (-) Length   408 a.a.
NCBI ID   WP_154772007.1    Uniprot ID   A0A6L6GD21
Organism   Acinetobacter sp. ANC 7201     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 314698..325924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3S51_RS01535 (P3S51_01535) - 316082..316405 (+) 324 WP_154772002.1 pyrimidine/purine nucleoside phosphorylase -
  P3S51_RS01540 (P3S51_01540) rlmB 316538..317287 (+) 750 WP_248103377.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  P3S51_RS01545 (P3S51_01545) - 317307..318227 (+) 921 WP_248103375.1 DMT family transporter -
  P3S51_RS01550 (P3S51_01550) coaE 318224..318829 (-) 606 WP_248103370.1 dephospho-CoA kinase -
  P3S51_RS01555 (P3S51_01555) pilD 318832..319698 (-) 867 WP_282441558.1 A24 family peptidase Machinery gene
  P3S51_RS01560 (P3S51_01560) pilC 319698..320924 (-) 1227 WP_154772007.1 type II secretion system F family protein Machinery gene
  P3S51_RS01565 (P3S51_01565) pilB 320954..322666 (-) 1713 WP_311918164.1 type IV-A pilus assembly ATPase PilB Machinery gene
  P3S51_RS01570 (P3S51_01570) tpiA 322943..323734 (+) 792 WP_154772009.1 triose-phosphate isomerase -
  P3S51_RS01575 (P3S51_01575) secG 323748..324077 (+) 330 WP_154772010.1 preprotein translocase subunit SecG -
  P3S51_RS01605 (P3S51_01605) rimP 325005..325529 (+) 525 WP_154772011.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44920.37 Da        Isoelectric Point: 9.6918

>NTDB_id=811736 P3S51_RS01560 WP_154772007.1 319698..320924(-) (pilC) [Acinetobacter sp. ANC 7201]
MAVKKAQMMPTFIYEGVDRKGAKLKGEIPARNMALAKVTLRKQGITIKSIREKKKNILESVFKKKVTTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLDNPAMREVVLGIKGEVEGGNTFAGALKKYPQYFDKLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPLTVVVVAFVVTIILMVKVVPVFEELFTSFGADLPAFTKMVVNMSEWMQSYWYILIIGIAATVI
GLTEAKKRSKKFRDLLDKMALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVS
TGQQLQFAMRATNVFPSMAIQMVAIGEESGALDSMLEKVATHYENEVDNAVDGLTAMMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=811736 P3S51_RS01560 WP_154772007.1 319698..320924(-) (pilC) [Acinetobacter sp. ANC 7201]
ATGGCTGTCAAAAAAGCACAGATGATGCCCACCTTCATATATGAAGGAGTTGACCGCAAAGGGGCTAAACTTAAAGGGGA
AATTCCAGCTCGCAATATGGCTTTAGCTAAAGTCACCCTGCGAAAACAAGGAATTACGATTAAATCCATTCGAGAAAAGA
AAAAGAATATTCTCGAAAGTGTCTTTAAAAAGAAAGTAACAACATTAGATATTACGATCTTCACTCGCCAACTTGCTACC
ATGATGAAAGCAGGTGTTCCTTTAGTTCAAAGTTTTGAAATTGTTGCTGAGGGCTTAGATAACCCTGCTATGCGCGAAGT
CGTATTGGGTATTAAAGGTGAAGTTGAAGGTGGTAATACTTTTGCTGGCGCACTTAAAAAATATCCTCAATATTTTGATA
AACTTTTTTGCTCACTTGTTGAATCGGGCGAACAATCTGGTGCGCTTGAAACCATGCTAGACCGTGTAGCTATATACAAA
GAGAAAAGTGAGCTTTTAAAACAAAAAATTAAGAAAGCTATGAAGTATCCGCTCACAGTTGTAGTCGTTGCTTTTGTAGT
TACCATTATTTTGATGGTTAAAGTTGTACCTGTTTTTGAAGAGCTATTTACATCTTTTGGTGCAGATTTACCTGCATTTA
CCAAAATGGTAGTAAACATGTCTGAATGGATGCAAAGCTATTGGTACATTTTAATTATTGGTATCGCTGCTACTGTAATT
GGATTAACTGAGGCGAAAAAACGCAGTAAAAAATTCCGAGATCTTTTAGACAAAATGGCATTAAAAGCCCCAATTTTTGG
TGATCTTGTTTATAAAGCAATTATTGCACGTTACAGCCGTACACTTGCAACAACCTTTGCCGCAGGTGTACCTCTGATTG
ATGCATTGGAATCGACAGCGGGTGCAACAAACAACGTTGTGTATGAAGAAGCTGTAATGAAAATTCGTGAAGATGTCTCA
ACAGGTCAACAACTTCAATTTGCCATGCGCGCAACTAACGTTTTCCCATCAATGGCAATACAAATGGTCGCTATTGGTGA
AGAATCCGGTGCGCTCGATTCAATGTTAGAAAAAGTTGCAACACACTACGAAAATGAAGTTGATAATGCCGTAGATGGCT
TAACAGCAATGATGGAGCCATTAATTATGGCTGTTCTTGGTGTACTAGTTGGTGGTCTTGTAATTGCCATGTACCTTCCA
ATTTTCCAAATGGGTTCTGTTGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L6GD21

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

87.5

100

0.875
  pilC Acinetobacter baylyi ADP1

81.863

100

0.819
  pilC Pseudomonas stutzeri DSM 10701

60.988

99.265

0.605
  pilC Legionella pneumophila strain ERS1305867

53.333

99.265

0.529
  pilG Neisseria gonorrhoeae MS11

47.236

97.549

0.461
  pilG Neisseria meningitidis 44/76-A

46.734

97.549

0.456
  pilC Vibrio cholerae strain A1552

42.892

100

0.429
  pilC Vibrio campbellii strain DS40M4

41.439

98.775

0.409
  pilC Thermus thermophilus HB27

35.971

100

0.368