Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   P3S51_RS01555 Genome accession   NZ_CP121303
Coordinates   318832..319698 (-) Length   288 a.a.
NCBI ID   WP_282441558.1    Uniprot ID   -
Organism   Acinetobacter sp. ANC 7201     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 313832..324698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3S51_RS01530 (P3S51_01530) recN 313888..315549 (-) 1662 WP_248103380.1 DNA repair protein RecN -
  P3S51_RS01535 (P3S51_01535) - 316082..316405 (+) 324 WP_154772002.1 pyrimidine/purine nucleoside phosphorylase -
  P3S51_RS01540 (P3S51_01540) rlmB 316538..317287 (+) 750 WP_248103377.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  P3S51_RS01545 (P3S51_01545) - 317307..318227 (+) 921 WP_248103375.1 DMT family transporter -
  P3S51_RS01550 (P3S51_01550) coaE 318224..318829 (-) 606 WP_248103370.1 dephospho-CoA kinase -
  P3S51_RS01555 (P3S51_01555) pilD 318832..319698 (-) 867 WP_282441558.1 A24 family peptidase Machinery gene
  P3S51_RS01560 (P3S51_01560) pilC 319698..320924 (-) 1227 WP_154772007.1 type II secretion system F family protein Machinery gene
  P3S51_RS01565 (P3S51_01565) pilB 320954..322666 (-) 1713 WP_311918164.1 type IV-A pilus assembly ATPase PilB Machinery gene
  P3S51_RS01570 (P3S51_01570) tpiA 322943..323734 (+) 792 WP_154772009.1 triose-phosphate isomerase -
  P3S51_RS01575 (P3S51_01575) secG 323748..324077 (+) 330 WP_154772010.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32213.64 Da        Isoelectric Point: 7.8590

>NTDB_id=811735 P3S51_RS01555 WP_282441558.1 318832..319698(-) (pilD) [Acinetobacter sp. ANC 7201]
MHELISYFILNPTALYIAVGVFSLCIGSFLNVVIYRTPKMMEQEWRTDCQFLLHPEQPIIDESKITLSKPDSTCPKCQSP
IRWYQNIPVISWLALKGKCGSCQNPISIRYPLIEVLTAVASLIVVAVFGPTLQMLFALVFTWVLITLTFIDFDTQLLPDR
YTLTLAALGLGINSFALYTSPTSAIWGYIIGFLCLWIVYYIFKLVTGKEGMGYGDFKLLAALGAWMGPMMLPLIVLLSSL
VGAIIGIILMKVRKENLPFAFGPYIAIAGWIAFLWGEKIMQLYLGQLG

Nucleotide


Download         Length: 867 bp        

>NTDB_id=811735 P3S51_RS01555 WP_282441558.1 318832..319698(-) (pilD) [Acinetobacter sp. ANC 7201]
ATGCACGAATTAATCTCTTATTTTATTTTAAATCCAACTGCACTTTATATTGCAGTTGGAGTTTTTAGTTTATGCATTGG
TAGTTTTTTAAATGTTGTTATTTATAGAACGCCTAAAATGATGGAACAAGAATGGCGTACAGATTGCCAATTCTTATTAC
ATCCTGAACAACCAATTATTGATGAATCAAAAATTACATTAAGTAAGCCTGATTCAACCTGCCCAAAATGCCAATCCCCT
ATTCGTTGGTATCAGAATATTCCTGTAATTAGTTGGCTTGCTTTAAAAGGAAAATGTGGGAGCTGCCAAAACCCAATTAG
CATTCGCTACCCACTTATTGAAGTGTTAACTGCTGTTGCATCACTTATAGTTGTTGCAGTATTTGGCCCTACACTTCAAA
TGTTATTTGCTTTGGTATTTACCTGGGTTTTAATTACCCTCACATTTATTGATTTTGACACCCAACTTTTACCAGATCGA
TATACTCTTACCTTAGCTGCACTTGGCTTAGGTATAAACAGCTTTGCACTTTATACATCTCCCACTTCAGCAATTTGGGG
CTATATCATTGGCTTCTTATGTCTTTGGATTGTGTACTACATCTTTAAATTAGTCACAGGCAAAGAAGGTATGGGTTATG
GCGATTTTAAATTACTTGCAGCTTTAGGTGCGTGGATGGGACCAATGATGCTCCCACTCATCGTACTACTTTCATCGTTG
GTTGGTGCTATTATTGGTATTATTCTAATGAAAGTTCGCAAGGAAAATCTTCCTTTTGCTTTTGGCCCTTATATTGCGAT
AGCAGGTTGGATTGCCTTTCTTTGGGGTGAAAAAATCATGCAATTATATTTAGGTCAGCTAGGTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

78.596

98.958

0.778
  pilD Acinetobacter nosocomialis M2

78.246

98.958

0.774
  pilD Vibrio cholerae strain A1552

52.857

97.222

0.514
  pilD Vibrio campbellii strain DS40M4

49.477

99.653

0.493
  pilD Neisseria gonorrhoeae MS11

48

95.486

0.458