Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   P7Y79_RS08665 Genome accession   NZ_CP121207
Coordinates   1787218..1788159 (-) Length   313 a.a.
NCBI ID   WP_278007457.1    Uniprot ID   -
Organism   Streptococcus ruminicola strain CNU_77-47     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1782218..1793159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7Y79_RS08625 (P7Y79_08625) - 1782290..1783489 (-) 1200 WP_039697418.1 acetate kinase -
  P7Y79_RS08630 (P7Y79_08630) comYH 1783543..1784499 (-) 957 WP_006531743.1 class I SAM-dependent methyltransferase Machinery gene
  P7Y79_RS08635 (P7Y79_08635) comGG 1784553..1784891 (-) 339 WP_278007454.1 competence type IV pilus minor pilin ComGG -
  P7Y79_RS08640 (P7Y79_08640) comYF 1784875..1785312 (-) 438 WP_278007455.1 competence type IV pilus minor pilin ComGF Machinery gene
  P7Y79_RS08645 (P7Y79_08645) comYE 1785296..1785589 (-) 294 WP_074564845.1 competence type IV pilus minor pilin ComGE Machinery gene
  P7Y79_RS08650 (P7Y79_08650) comYD 1785543..1785974 (-) 432 WP_278007456.1 competence type IV pilus minor pilin ComGD Machinery gene
  P7Y79_RS08655 (P7Y79_08655) comYC 1785949..1786251 (-) 303 WP_157628643.1 competence type IV pilus major pilin ComGC Machinery gene
  P7Y79_RS08660 (P7Y79_08660) comYB 1786251..1787294 (-) 1044 WP_200769393.1 competence type IV pilus assembly protein ComGB Machinery gene
  P7Y79_RS08665 (P7Y79_08665) comYA 1787218..1788159 (-) 942 WP_278007457.1 competence type IV pilus ATPase ComGA Machinery gene
  P7Y79_RS08670 (P7Y79_08670) - 1788232..1788600 (-) 369 WP_074564836.1 DUF1033 family protein -
  P7Y79_RS08675 (P7Y79_08675) rpoC 1788756..1792394 (-) 3639 WP_133018093.1 DNA-directed RNA polymerase subunit beta' -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 35596.73 Da        Isoelectric Point: 5.4985

>NTDB_id=811130 P7Y79_RS08665 WP_278007457.1 1787218..1788159(-) (comYA) [Streptococcus ruminicola strain CNU_77-47]
MIQEKAKQLIKDAVEKNAQDIYIVPKKEHYEIYQRVGDERQFIQELASDEVTSVISHFKFVAGMNVGEKRRSQLGSCDYE
FAEGEVISLRLSTVGDYRGRESLVIRLLYSGRHDLQYWFDGMKNILEAIDSRGLYLFSGPVGSGKTTLMYQLVREKFPDK
QVITIEDPVEIKQDNMLQLQLNDEIGMTYDNLIKLSLRHRPDILIIGEIRDSETARAVIRASLTGVLVFSTIHAKSIPGV
YARLLELGVSKQELENSLRAIIYQRLIGGGGVVDFAKGDFEQYPPTRWNEQIESLARDGHISLEEAKIEKIAL

Nucleotide


Download         Length: 942 bp        

>NTDB_id=811130 P7Y79_RS08665 WP_278007457.1 1787218..1788159(-) (comYA) [Streptococcus ruminicola strain CNU_77-47]
ATGATTCAGGAAAAAGCAAAGCAGCTGATCAAGGATGCTGTTGAAAAGAATGCGCAAGATATTTACATTGTTCCTAAGAA
GGAGCACTATGAAATTTATCAACGTGTTGGTGATGAACGTCAGTTTATTCAGGAGCTTGCTAGTGATGAGGTGACAAGTG
TGATTAGTCACTTTAAATTTGTAGCTGGGATGAATGTTGGTGAGAAACGTCGTAGTCAGCTAGGGTCTTGTGATTATGAA
TTTGCTGAGGGTGAAGTGATTTCACTGCGTTTATCTACTGTTGGTGACTATCGCGGGCGTGAGAGCCTGGTCATCAGACT
TCTTTATTCAGGTCGTCATGATTTGCAATATTGGTTCGATGGGATGAAGAATATTTTAGAGGCGATTGATAGTCGAGGTC
TTTATCTTTTTTCCGGGCCGGTAGGGAGTGGAAAGACTACTCTCATGTATCAATTGGTTCGTGAAAAGTTCCCTGATAAG
CAGGTCATTACGATAGAAGATCCTGTTGAGATTAAGCAGGACAATATGTTGCAGCTGCAACTTAATGATGAGATTGGCAT
GACTTATGATAATCTTATCAAGCTCTCGCTTCGTCATAGACCTGATATTTTGATTATTGGTGAGATTCGTGATAGTGAGA
CAGCGCGTGCGGTTATTAGAGCTAGTCTGACAGGTGTGCTCGTCTTTTCAACCATTCATGCTAAGAGTATCCCGGGTGTC
TATGCAAGATTATTAGAATTGGGAGTTAGTAAGCAGGAACTTGAAAATAGTTTGCGAGCTATTATTTATCAGCGGTTAAT
TGGCGGTGGAGGTGTTGTGGATTTTGCCAAAGGAGATTTTGAACAGTATCCCCCAACAAGGTGGAATGAGCAAATTGAAA
GCCTTGCTAGGGACGGACATATTAGCCTTGAGGAAGCAAAAATCGAAAAAATTGCCCTTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus mutans UA159

71.061

99.361

0.706
  comYA Streptococcus mutans UA140

70.74

99.361

0.703
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

67.419

99.042

0.668
  comYA Streptococcus gordonii str. Challis substr. CH1

65.595

99.361

0.652
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

65.064

99.681

0.649
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

64.103

99.681

0.639
  comGA/cglA/cilD Streptococcus pneumoniae D39

64.103

99.681

0.639
  comGA/cglA/cilD Streptococcus pneumoniae R6

64.103

99.681

0.639
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

64.103

99.681

0.639
  comGA Lactococcus lactis subsp. cremoris KW2

54.633

100

0.546
  comGA Latilactobacillus sakei subsp. sakei 23K

43.431

87.54

0.38