Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   P7Y79_RS08660 Genome accession   NZ_CP121207
Coordinates   1786251..1787294 (-) Length   347 a.a.
NCBI ID   WP_200769393.1    Uniprot ID   -
Organism   Streptococcus ruminicola strain CNU_77-47     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1781251..1792294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7Y79_RS08610 (P7Y79_08610) - 1781262..1781717 (-) 456 WP_278007453.1 ABC transporter permease -
  P7Y79_RS08615 (P7Y79_08615) - 1781718..1781918 (-) 201 WP_006531740.1 hypothetical protein -
  P7Y79_RS08620 (P7Y79_08620) - 1781934..1782131 (-) 198 WP_074561137.1 helix-turn-helix transcriptional regulator -
  P7Y79_RS08625 (P7Y79_08625) - 1782290..1783489 (-) 1200 WP_039697418.1 acetate kinase -
  P7Y79_RS08630 (P7Y79_08630) comYH 1783543..1784499 (-) 957 WP_006531743.1 class I SAM-dependent methyltransferase Machinery gene
  P7Y79_RS08635 (P7Y79_08635) comGG 1784553..1784891 (-) 339 WP_278007454.1 competence type IV pilus minor pilin ComGG -
  P7Y79_RS08640 (P7Y79_08640) comYF 1784875..1785312 (-) 438 WP_278007455.1 competence type IV pilus minor pilin ComGF Machinery gene
  P7Y79_RS08645 (P7Y79_08645) comYE 1785296..1785589 (-) 294 WP_074564845.1 competence type IV pilus minor pilin ComGE Machinery gene
  P7Y79_RS08650 (P7Y79_08650) comYD 1785543..1785974 (-) 432 WP_278007456.1 competence type IV pilus minor pilin ComGD Machinery gene
  P7Y79_RS08655 (P7Y79_08655) comYC 1785949..1786251 (-) 303 WP_157628643.1 competence type IV pilus major pilin ComGC Machinery gene
  P7Y79_RS08660 (P7Y79_08660) comYB 1786251..1787294 (-) 1044 WP_200769393.1 competence type IV pilus assembly protein ComGB Machinery gene
  P7Y79_RS08665 (P7Y79_08665) comYA 1787218..1788159 (-) 942 WP_278007457.1 competence type IV pilus ATPase ComGA Machinery gene
  P7Y79_RS08670 (P7Y79_08670) - 1788232..1788600 (-) 369 WP_074564836.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39647.01 Da        Isoelectric Point: 9.4907

>NTDB_id=811129 P7Y79_RS08660 WP_200769393.1 1786251..1787294(-) (comYB) [Streptococcus ruminicola strain CNU_77-47]
MSKLKALLGTDILALRKQKSKKLPFKKQQKVIQLFNNLFNSGFNLTEIVSFLRRSQLLAEVYVDSMQESLLSGESLADMM
AKLGFSDTIVTQIALADVHGNCQQSLLKIDGYLASMSVVRKKLIEVATYPLILLSFLILIMLGLKNYLLPQLENQNFATQ
IISHFPMIFLGGFALLALGILLGVLYAKRLSPIYLYSQLSRLPIFGRYVRLYLTAYYAREWGNLIGQGIELMEIVELMQR
QKSRLFQEIGKDMQEALLSGQSFHQKVLDYPFFLRELSLMIEYGEVKSKLGRELDIYAEETWQNFFSQLTQATQLIQPLV
FVFVALIIVLIYVAMLLPMYQNMGGNF

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=811129 P7Y79_RS08660 WP_200769393.1 1786251..1787294(-) (comYB) [Streptococcus ruminicola strain CNU_77-47]
ATGAGCAAATTGAAAGCCTTGCTAGGGACGGACATATTAGCCTTGAGGAAGCAAAAATCGAAAAAATTGCCCTTTAAAAA
ACAGCAGAAGGTGATTCAATTATTTAACAATCTCTTTAACAGTGGCTTTAATTTAACAGAAATTGTTTCTTTTTTGAGAC
GAAGTCAATTGTTGGCAGAAGTTTATGTGGATAGTATGCAAGAATCTTTGCTAAGCGGTGAGAGCTTGGCGGATATGATG
GCTAAATTAGGCTTTTCAGATACAATTGTCACTCAGATTGCTTTGGCAGATGTTCATGGAAATTGTCAGCAGAGTTTGTT
AAAAATTGATGGCTACTTGGCCAGTATGTCAGTTGTTCGAAAGAAATTGATTGAAGTGGCGACTTATCCTTTGATTTTGC
TCAGCTTTTTAATTCTGATTATGTTGGGCTTGAAAAATTATTTGCTGCCGCAGTTGGAAAATCAAAATTTTGCGACTCAG
ATTATCAGCCATTTTCCTATGATTTTTTTAGGTGGCTTTGCTCTTTTAGCTTTAGGAATTCTGCTTGGGGTTCTGTATGC
CAAGCGCTTATCGCCAATTTATCTGTATAGTCAGTTGAGTCGTTTGCCAATCTTTGGGCGGTACGTGCGTCTTTATTTGA
CCGCCTATTATGCGCGTGAGTGGGGAAATCTCATCGGGCAAGGTATTGAGCTTATGGAGATTGTAGAGCTCATGCAGCGG
CAAAAATCACGCCTTTTTCAGGAAATTGGAAAAGACATGCAGGAAGCTTTATTGTCAGGTCAATCTTTTCATCAGAAAGT
GCTGGATTACCCTTTCTTTTTGCGTGAACTTAGCTTAATGATTGAATACGGCGAGGTTAAGTCAAAATTAGGTCGTGAGT
TAGATATTTATGCCGAAGAGACTTGGCAGAATTTCTTTAGTCAATTGACACAGGCAACGCAACTGATTCAGCCTTTGGTC
TTTGTCTTTGTTGCTTTAATCATCGTTTTAATTTATGTGGCAATGCTTTTGCCAATGTATCAAAATATGGGAGGAAATTT
TTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(218-338)

Type II secretion system (T2SS), protein F (T2SSF)

(33-150)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

65.506

91.066

0.597
  comYB Streptococcus mutans UA159

65.506

91.066

0.597
  comYB Streptococcus gordonii str. Challis substr. CH1

58.529

97.983

0.573
  comGB/cglB Streptococcus mitis NCTC 12261

58.457

97.118

0.568
  comGB/cglB Streptococcus mitis SK321

57.567

97.118

0.559
  comGB/cglB Streptococcus pneumoniae Rx1

56.973

97.118

0.553
  comGB/cglB Streptococcus pneumoniae D39

56.973

97.118

0.553
  comGB/cglB Streptococcus pneumoniae R6

56.973

97.118

0.553
  comGB/cglB Streptococcus pneumoniae TIGR4

56.973

97.118

0.553
  comGB Lactococcus lactis subsp. cremoris KW2

51.786

96.83

0.501