Detailed information NTG0811125

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: P7Y79_RS08640
• Genome accession: NZ_CP121207
• Coordinates: 1784875..1785312 (-)
• Length: 145 a.a.
• NCBI ID: WP_278007455.1
• Uniprot ID: -
• Organism: Streptococcus ruminicola strain CNU_77-47
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1779875..1790312

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P7Y79_RS08605 (P7Y79_08605)	-	1780611..1781246 (-)	636	WP_158914707.1	type II CAAX endopeptidase family protein	-
P7Y79_RS08610 (P7Y79_08610)	-	1781262..1781717 (-)	456	WP_278007453.1	ABC transporter permease	-
P7Y79_RS08615 (P7Y79_08615)	-	1781718..1781918 (-)	201	WP_006531740.1	hypothetical protein	-
P7Y79_RS08620 (P7Y79_08620)	-	1781934..1782131 (-)	198	WP_074561137.1	helix-turn-helix transcriptional regulator	-
P7Y79_RS08625 (P7Y79_08625)	-	1782290..1783489 (-)	1200	WP_039697418.1	acetate kinase	-
P7Y79_RS08630 (P7Y79_08630)	comYH	1783543..1784499 (-)	957	WP_006531743.1	class I SAM-dependent methyltransferase	Machinery gene
P7Y79_RS08635 (P7Y79_08635)	comGG	1784553..1784891 (-)	339	WP_278007454.1	competence type IV pilus minor pilin ComGG	-
P7Y79_RS08640 (P7Y79_08640)	comYF	1784875..1785312 (-)	438	WP_278007455.1	competence type IV pilus minor pilin ComGF	Machinery gene
P7Y79_RS08645 (P7Y79_08645)	comYE	1785296..1785589 (-)	294	WP_074564845.1	competence type IV pilus minor pilin ComGE	Machinery gene
P7Y79_RS08650 (P7Y79_08650)	comYD	1785543..1785974 (-)	432	WP_278007456.1	competence type IV pilus minor pilin ComGD	Machinery gene
P7Y79_RS08655 (P7Y79_08655)	comYC	1785949..1786251 (-)	303	WP_157628643.1	competence type IV pilus major pilin ComGC	Machinery gene
P7Y79_RS08660 (P7Y79_08660)	comYB	1786251..1787294 (-)	1044	WP_200769393.1	competence type IV pilus assembly protein ComGB	Machinery gene
P7Y79_RS08665 (P7Y79_08665)	comYA	1787218..1788159 (-)	942	WP_278007457.1	competence type IV pilus ATPase ComGA	Machinery gene
P7Y79_RS08670 (P7Y79_08670)	-	1788232..1788600 (-)	369	WP_074564836.1	DUF1033 family protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16159.49 Da
• Isoelectric Point: 8.9678

>NTDB_id=811125 P7Y79_RS08640 WP_278007455.1 1784875..1785312(-) (comYF) [Streptococcus ruminicola strain CNU_77-47]
MSRKIRLRAFTLLESLVALLVISGSILVYQGLTQSISSNIHYLSANQEEKWLLFSQQLRSELAGCQLDKVADNKLYVSKG
NQQLAYGLSKADDFRKTNASGQGYQPMLFGVTSSSISQDGNKVMIKLQLGSDMERCFVYTFETTS

Nucleotide

• Length: 438 bp

>NTDB_id=811125 P7Y79_RS08640 WP_278007455.1 1784875..1785312(-) (comYF) [Streptococcus ruminicola strain CNU_77-47]
ATGTCACGAAAAATTAGGTTAAGAGCTTTTACCCTTTTAGAGAGCTTAGTGGCTTTGCTGGTTATCTCAGGTTCCATATT
GGTTTATCAAGGATTGACTCAAAGCATTTCAAGTAATATCCATTATTTATCGGCGAATCAAGAGGAAAAATGGTTGCTCT
TTTCTCAGCAGCTGCGTTCTGAACTTGCGGGTTGTCAGTTGGATAAAGTTGCCGACAACAAACTCTATGTTAGTAAAGGT
AATCAGCAATTGGCTTATGGCTTGTCTAAGGCTGATGATTTTCGAAAAACAAATGCCTCAGGTCAGGGTTATCAACCCAT
GCTCTTTGGCGTGACGTCATCTAGCATCAGTCAGGATGGCAATAAGGTGATGATTAAATTGCAATTAGGCAGTGATATGG
AGAGATGTTTTGTTTACACTTTTGAGACGACAAGTTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (38-129)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	59.712	95.862	0.572
comYF	Streptococcus mutans UA159	58.993	95.862	0.566
comGF	Lactococcus lactis subsp. cremoris KW2	45.39	97.241	0.441
comGF/cglF	Streptococcus pneumoniae Rx1	44.681	97.241	0.434
comGF/cglF	Streptococcus pneumoniae D39	44.681	97.241	0.434
comGF/cglF	Streptococcus pneumoniae R6	44.681	97.241	0.434
comGF/cglF	Streptococcus pneumoniae TIGR4	44.681	97.241	0.434
comGF/cglF	Streptococcus mitis NCTC 12261	42.958	97.931	0.421
comGF/cglF	Streptococcus mitis SK321	42.254	97.931	0.414