Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   P7Y79_RS08570 Genome accession   NZ_CP121207
Coordinates   1776063..1776458 (-) Length   131 a.a.
NCBI ID   WP_039697429.1    Uniprot ID   A0A091BN91
Organism   Streptococcus ruminicola strain CNU_77-47     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1771063..1781458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7Y79_RS08565 (P7Y79_08565) - 1775089..1775889 (-) 801 WP_039697430.1 Cof-type HAD-IIB family hydrolase -
  P7Y79_RS08570 (P7Y79_08570) ssbA 1776063..1776458 (-) 396 WP_039697429.1 single-stranded DNA-binding protein Machinery gene
  P7Y79_RS08575 (P7Y79_08575) - 1776568..1777284 (+) 717 WP_278007450.1 class I SAM-dependent methyltransferase -
  P7Y79_RS08580 (P7Y79_08580) ytpR 1777321..1777947 (-) 627 WP_278007451.1 YtpR family tRNA-binding protein -
  P7Y79_RS08585 (P7Y79_08585) - 1777956..1778273 (-) 318 WP_039697426.1 thioredoxin family protein -
  P7Y79_RS08590 (P7Y79_08590) - 1778266..1778559 (-) 294 WP_157628649.1 DUF4651 domain-containing protein -
  P7Y79_RS08595 (P7Y79_08595) pepA 1778677..1779744 (+) 1068 WP_278007452.1 glutamyl aminopeptidase -
  P7Y79_RS08600 (P7Y79_08600) proC 1779806..1780576 (+) 771 WP_039697503.1 pyrroline-5-carboxylate reductase -
  P7Y79_RS08605 (P7Y79_08605) - 1780611..1781246 (-) 636 WP_158914707.1 type II CAAX endopeptidase family protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14874.91 Da        Isoelectric Point: 5.7916

>NTDB_id=811122 P7Y79_RS08570 WP_039697429.1 1776063..1776458(-) (ssbA) [Streptococcus ruminicola strain CNU_77-47]
MYNKVIMIGRLTAQPELVTTPTEKSVTRVTLAVNRRFKSQNGEREADFISLVVWGRLAETLVSYAGKGSLISVDGELRTR
KYEKDGHTNYVTEVLCHSFQLLESRAQRAMRENNVANDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=811122 P7Y79_RS08570 WP_039697429.1 1776063..1776458(-) (ssbA) [Streptococcus ruminicola strain CNU_77-47]
ATGTACAATAAAGTTATTATGATTGGGCGTTTGACAGCGCAGCCTGAATTGGTGACAACGCCAACCGAAAAATCTGTTAC
ACGTGTAACACTTGCGGTCAATCGACGTTTTAAATCACAAAATGGTGAGCGTGAAGCGGACTTTATTTCGCTTGTGGTTT
GGGGACGTTTGGCAGAAACGCTCGTTTCTTATGCTGGAAAAGGCAGTTTGATTTCTGTAGATGGCGAGCTTCGTACGCGT
AAATACGAAAAAGATGGTCACACCAATTATGTGACAGAAGTGCTCTGCCATTCTTTCCAACTATTAGAAAGCCGTGCCCA
ACGTGCCATGCGAGAAAATAATGTGGCCAATGATTTGGCTGACCTTGTGCTGGAAGAGGAAGAATTACCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A091BN91

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

80.916

100

0.809
  ssbB/cilA Streptococcus pneumoniae R6

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae Rx1

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae D39

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae TIGR4

77.099

100

0.771
  ssbB Streptococcus sobrinus strain NIDR 6715-7

77.099

100

0.771
  ssbB/cilA Streptococcus mitis NCTC 12261

76.336

100

0.763
  ssbB/cilA Streptococcus mitis SK321

76.336

100

0.763
  ssbB Lactococcus lactis subsp. cremoris KW2

62.281

87.023

0.542
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.887

80.916

0.42
  ssb Latilactobacillus sakei subsp. sakei 23K

45.299

89.313

0.405