Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   HT081_RS10940 Genome accession   NZ_AP023073
Coordinates   2096084..2096566 (-) Length   160 a.a.
NCBI ID   WP_172762861.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain TUM15753     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2091084..2101566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT081_RS10915 (TUM15753C_20920) msrAB 2091464..2093032 (-) 1569 WP_003694393.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  HT081_RS10920 (TUM15753C_20930) pilA 2093178..2094431 (+) 1254 WP_003696286.1 signal recognition particle-docking protein FtsY Machinery gene
  HT081_RS10925 - 2094545..2094682 (-) 138 WP_172760541.1 hypothetical protein -
  HT081_RS10930 (TUM15753C_20940) - 2094696..2095490 (-) 795 Protein_2119 opacity family porin -
  HT081_RS10935 - 2095417..2095572 (+) 156 WP_172763131.1 hypothetical protein -
  HT081_RS10940 (TUM15753C_20950) pilE 2096084..2096566 (-) 483 WP_172762861.1 pilin Machinery gene
  HT081_RS10945 - 2096935..2097078 (-) 144 WP_172763123.1 hypothetical protein -
  HT081_RS10950 - 2097183..2097263 (-) 81 Protein_2123 pilin -
  HT081_RS10955 (TUM15753C_20960) pilE 2097381..2097800 (-) 420 WP_172760461.1 pilin Machinery gene
  HT081_RS10960 (TUM15753C_20970) lpxC 2097920..2098843 (-) 924 WP_172760462.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  HT081_RS12285 (TUM15753C_20980) - 2099345..2100061 (-) 717 WP_366557442.1 pilin -
  HT081_RS10980 (TUM15753C_20990) pilE 2099985..2100302 (-) 318 WP_003697861.1 pilin Machinery gene
  HT081_RS10985 - 2100675..2100806 (-) 132 WP_010356054.1 hypothetical protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17285.63 Da        Isoelectric Point: 8.9744

>NTDB_id=81104 HT081_RS10940 WP_172762861.1 2096084..2096566(-) (pilE) [Neisseria gonorrhoeae strain TUM15753]
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGKWPANNGNAGVASPSDIK
GKYVESVTVANGVVTATMNSSNVNKEIKDKRLSLWGRRENGSVKWFCGQPVKRDDAAKDDTNAIDTKHLPSTCRDKSTAT

Nucleotide


Download         Length: 483 bp        

>NTDB_id=81104 HT081_RS10940 WP_172762861.1 2096084..2096566(-) (pilE) [Neisseria gonorrhoeae strain TUM15753]
ATGAATACCCTTCAAAAAGGCTTTACCCTTATCGAGCTGATGATTGTGATCGCCATCGTCGGCATTTTGGCGGCAGTCGC
CCTTCCCGCCTACCAAGACTACACCGCCCGCGCGCAAGTTTCCGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCG
TCACCGAGTATTACCTGAATCACGGCAAATGGCCCGCAAACAACGGTAATGCCGGCGTGGCATCCCCCTCCGACATCAAA
GGCAAATATGTTGAAAGCGTTACGGTCGCAAACGGCGTCGTTACCGCCACAATGAATTCAAGCAACGTAAACAAAGAAAT
CAAAGACAAAAGACTCTCCCTGTGGGGCAGGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCG
ACGACGCCGCCAAAGACGACACCAACGCCATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATAAATCAACTGCCACC
TAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)

Pilin (bacterial filament) (Pilin)

(36-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

83.436

100

0.85
  pilE Neisseria gonorrhoeae strain FA1090

79.878

100

0.819
  comP Acinetobacter baylyi ADP1

39.241

98.75

0.388
  pilA/pilA1 Eikenella corrodens VA1

36.145

100

0.375
  pilA2 Legionella pneumophila strain ERS1305867

39.735

94.375

0.375
  pilA2 Legionella pneumophila str. Paris

39.735

94.375

0.375
  pilA Ralstonia pseudosolanacearum GMI1000

35.366

100

0.363

Multiple sequence alignment