Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   P7F70_RS00895 Genome accession   NZ_CP121201
Coordinates   152797..153192 (+) Length   131 a.a.
NCBI ID   WP_218653905.1    Uniprot ID   -
Organism   Streptococcus pluranimalium strain SP28     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 147797..158192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7F70_RS00860 (P7F70_00860) pepA 148299..149363 (-) 1065 WP_278024851.1 glutamyl aminopeptidase -
  P7F70_RS00865 (P7F70_00865) - 149508..149708 (-) 201 WP_104967117.1 cold-shock protein -
  P7F70_RS00870 (P7F70_00870) - 149900..150181 (+) 282 WP_340655206.1 DUF4651 domain-containing protein -
  P7F70_RS00875 (P7F70_00875) - 150178..150492 (+) 315 WP_278024853.1 thioredoxin family protein -
  P7F70_RS00880 (P7F70_00880) ytpR 150499..151125 (+) 627 WP_278024854.1 YtpR family tRNA-binding protein -
  P7F70_RS00885 (P7F70_00885) - 151653..151940 (-) 288 WP_278024855.1 hypothetical protein -
  P7F70_RS00890 (P7F70_00890) - 152023..152733 (-) 711 WP_278024856.1 class I SAM-dependent methyltransferase -
  P7F70_RS00895 (P7F70_00895) ssbA 152797..153192 (+) 396 WP_218653905.1 single-stranded DNA-binding protein Machinery gene
  P7F70_RS00900 (P7F70_00900) - 153458..154255 (+) 798 WP_278024857.1 Cof-type HAD-IIB family hydrolase -
  P7F70_RS00905 (P7F70_00905) - 154336..155301 (+) 966 WP_278024858.1 substrate-binding domain-containing protein -
  P7F70_RS00910 (P7F70_00910) - 155301..156605 (+) 1305 WP_278024859.1 sensor histidine kinase -
  P7F70_RS00915 (P7F70_00915) - 156615..157295 (+) 681 WP_115129555.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14809.82 Da        Isoelectric Point: 5.9496

>NTDB_id=810975 P7F70_RS00895 WP_218653905.1 152797..153192(+) (ssbA) [Streptococcus pluranimalium strain SP28]
MYNKTILIGRLVATPEIVKTPNDKSVARVTVAVNRRFKSKDGEREADFVNVVFWGRLAETLASYGTKGSLISLDGELRTR
SYEKDGQKHYMTEVLGQSFQLLESRAQRAMRENNVAADLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=810975 P7F70_RS00895 WP_218653905.1 152797..153192(+) (ssbA) [Streptococcus pluranimalium strain SP28]
ATGTATAATAAAACGATTTTAATTGGCCGCTTGGTAGCTACGCCTGAGATAGTGAAGACGCCTAATGATAAGTCTGTGGC
ACGTGTGACGGTTGCTGTCAATCGCCGCTTTAAGTCTAAGGATGGCGAGCGTGAAGCAGATTTTGTCAATGTAGTCTTTT
GGGGACGTTTGGCAGAAACACTGGCTTCTTACGGGACCAAGGGTAGTTTGATTTCATTGGATGGAGAGTTGCGAACGCGC
TCATATGAAAAAGACGGGCAAAAACACTATATGACAGAAGTCTTAGGACAATCCTTCCAATTGCTAGAAAGTCGTGCCCA
ACGTGCCATGCGTGAGAATAACGTAGCAGCAGACTTAGCGGATCTAGTGCTGGAAGAAGAGGAGCTACCCTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

84.733

100

0.847
  ssbB/cilA Streptococcus pneumoniae TIGR4

78.626

100

0.786
  ssbB/cilA Streptococcus pneumoniae Rx1

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae D39

77.863

100

0.779
  ssbB/cilA Streptococcus mitis SK321

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae R6

77.863

100

0.779
  ssbB Streptococcus sobrinus strain NIDR 6715-7

77.863

100

0.779
  ssbB/cilA Streptococcus mitis NCTC 12261

76.336

100

0.763
  ssbB Lactococcus lactis subsp. cremoris KW2

64.035

87.023

0.557
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405
  ssb Latilactobacillus sakei subsp. sakei 23K

42.373

90.076

0.382