Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | P8R99_RS09255 | Genome accession | NZ_CP121160 |
| Coordinates | 1751737..1752132 (+) | Length | 131 a.a. |
| NCBI ID | WP_000282447.1 | Uniprot ID | A0AAV3JLT6 |
| Organism | Streptococcus agalactiae strain S5 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1745479..1786992 | 1751737..1752132 | within | 0 |
Gene organization within MGE regions
Location: 1745479..1786992
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P8R99_RS09200 | - | 1745479..1745685 (+) | 207 | WP_000798241.1 | helix-turn-helix transcriptional regulator | - |
| P8R99_RS09205 | - | 1745744..1745881 (+) | 138 | WP_079263416.1 | hypothetical protein | - |
| P8R99_RS09210 | - | 1745984..1746376 (+) | 393 | WP_001265365.1 | hypothetical protein | - |
| P8R99_RS09215 | - | 1746445..1747110 (+) | 666 | WP_000008107.1 | type II CAAX endopeptidase family protein | - |
| P8R99_RS09220 | proC | 1747131..1747901 (-) | 771 | WP_001867096.1 | pyrroline-5-carboxylate reductase | - |
| P8R99_RS09225 | pepA | 1747971..1749038 (-) | 1068 | WP_001281326.1 | glutamyl aminopeptidase | - |
| P8R99_RS09230 | - | 1749223..1749462 (-) | 240 | WP_278043278.1 | hypothetical protein | - |
| P8R99_RS09235 | - | 1749623..1749907 (+) | 285 | WP_000791272.1 | DUF4651 domain-containing protein | - |
| P8R99_RS09240 | - | 1749904..1750227 (+) | 324 | WP_000602780.1 | thioredoxin family protein | - |
| P8R99_RS09245 | ytpR | 1750260..1750886 (+) | 627 | WP_000578324.1 | YtpR family tRNA-binding protein | - |
| P8R99_RS09250 | - | 1750940..1751656 (-) | 717 | WP_000186181.1 | class I SAM-dependent methyltransferase | - |
| P8R99_RS09255 | ssbA | 1751737..1752132 (+) | 396 | WP_000282447.1 | single-stranded DNA-binding protein | Machinery gene |
| P8R99_RS09260 | - | 1752256..1752900 (+) | 645 | WP_000416615.1 | HAD family hydrolase | - |
| P8R99_RS09265 | - | 1752927..1754672 (+) | 1746 | WP_000930336.1 | LytS/YhcK type 5TM receptor domain-containing protein | - |
| P8R99_RS09270 | - | 1754653..1755393 (+) | 741 | WP_000697630.1 | LytTR family transcriptional regulator DNA-binding domain-containing protein | - |
| P8R99_RS09275 | - | 1755563..1756018 (+) | 456 | WP_000683316.1 | CidA/LrgA family protein | - |
| P8R99_RS09280 | lrgB | 1756020..1756748 (+) | 729 | WP_000421727.1 | antiholin-like protein LrgB | - |
| P8R99_RS09285 | - | 1756990..1758618 (+) | 1629 | WP_000170502.1 | ABC transporter substrate-binding protein | - |
| P8R99_RS09290 | - | 1758731..1759297 (+) | 567 | Protein_1750 | ABC transporter permease | - |
| P8R99_RS09295 | - | 1759372..1760052 (+) | 681 | WP_278043276.1 | IS6-like element IS1216 family transposase | - |
| P8R99_RS09300 | - | 1760107..1760661 (+) | 555 | Protein_1752 | ImmA/IrrE family metallo-endopeptidase | - |
| P8R99_RS09305 | ltrA | 1761214..1762491 (+) | 1278 | WP_001292556.1 | group II intron reverse transcriptase/maturase | - |
| P8R99_RS09310 | - | 1762700..1764448 (+) | 1749 | WP_222351475.1 | DNA topoisomerase | - |
| P8R99_RS09315 | - | 1764450..1766282 (+) | 1833 | WP_000340813.1 | ATP-dependent Clp protease ATP-binding subunit | - |
| P8R99_RS09320 | - | 1766374..1766721 (+) | 348 | WP_000837589.1 | TrbC/VirB2 family protein | - |
| P8R99_RS09325 | - | 1766732..1767805 (+) | 1074 | WP_000874142.1 | hypothetical protein | - |
| P8R99_RS09330 | - | 1767823..1768596 (+) | 774 | WP_000163066.1 | LPXTG cell wall anchor domain-containing protein | - |
| P8R99_RS09335 | - | 1768661..1770865 (+) | 2205 | WP_000191306.1 | LPXTG cell wall anchor domain-containing protein | - |
| P8R99_RS09340 | - | 1770906..1771379 (+) | 474 | WP_278043279.1 | single-stranded DNA-binding protein | - |
| P8R99_RS09345 | - | 1771707..1771964 (+) | 258 | WP_017650552.1 | hypothetical protein | - |
| P8R99_RS09350 | - | 1771957..1775106 (+) | 3150 | WP_000493312.1 | VirD4-like conjugal transfer protein, CD1115 family | - |
| P8R99_RS09355 | - | 1775207..1775686 (+) | 480 | WP_000768448.1 | hypothetical protein | - |
| P8R99_RS09360 | - | 1775807..1777900 (+) | 2094 | WP_000872922.1 | pLS20_p028 family conjugation system transmembrane protein | - |
| P8R99_RS09365 | - | 1777906..1778190 (+) | 285 | WP_000883907.1 | BRCT domain-containing protein | - |
| P8R99_RS09370 | - | 1778333..1778638 (+) | 306 | WP_000343795.1 | DUF5592 family protein | - |
| P8R99_RS09375 | - | 1778638..1779282 (+) | 645 | WP_000985695.1 | hypothetical protein | - |
| P8R99_RS09380 | - | 1779297..1781246 (+) | 1950 | WP_222357190.1 | virulence factor | - |
| P8R99_RS09385 | - | 1781260..1781520 (+) | 261 | WP_000038855.1 | hypothetical protein | - |
| P8R99_RS09390 | - | 1781534..1782856 (+) | 1323 | WP_000710458.1 | glucosaminidase domain-containing protein | - |
| P8R99_RS09395 | - | 1782874..1783461 (+) | 588 | WP_000483555.1 | hypothetical protein | - |
| P8R99_RS09400 | - | 1783606..1784424 (+) | 819 | WP_278043280.1 | AAA family ATPase | - |
| P8R99_RS09405 | - | 1784424..1784696 (+) | 273 | WP_001282888.1 | hypothetical protein | - |
| P8R99_RS09410 | - | 1784795..1785172 (+) | 378 | WP_278043281.1 | hypothetical protein | - |
| P8R99_RS09415 | - | 1785169..1785525 (+) | 357 | WP_222357191.1 | hypothetical protein | - |
| P8R99_RS09420 | - | 1785658..1786992 (+) | 1335 | WP_222357192.1 | ISLre2 family transposase | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 14774.80 Da Isoelectric Point: 7.0189
>NTDB_id=810693 P8R99_RS09255 WP_000282447.1 1751737..1752132(+) (ssbA) [Streptococcus agalactiae strain S5]
MYNKVIMIGRLTAKPEMVKTPTDKSVTRATVAVNRRFKGSNGEREADFINVVMWGRLAETLASYGTKGSLISIDGELRTR
KYEKDGQTHYITEVLASSFQLLESRAQRAMRENNVSGDLSDLVLEEEELPF
MYNKVIMIGRLTAKPEMVKTPTDKSVTRATVAVNRRFKGSNGEREADFINVVMWGRLAETLASYGTKGSLISIDGELRTR
KYEKDGQTHYITEVLASSFQLLESRAQRAMRENNVSGDLSDLVLEEEELPF
Nucleotide
Download Length: 396 bp
>NTDB_id=810693 P8R99_RS09255 WP_000282447.1 1751737..1752132(+) (ssbA) [Streptococcus agalactiae strain S5]
ATGTATAATAAAGTTATTATGATTGGGCGTCTAACAGCAAAGCCTGAGATGGTAAAAACACCAACTGACAAGTCAGTAAC
GCGTGCAACTGTTGCTGTTAATAGACGCTTTAAAGGAAGTAATGGTGAGCGTGAAGCAGATTTTATTAATGTGGTTATGT
GGGGTCGTCTAGCGGAAACCCTTGCGAGCTATGGGACAAAGGGCTCTTTAATTTCAATAGATGGTGAATTGCGTACGCGC
AAGTACGAAAAGGATGGTCAAACGCACTATATCACTGAAGTATTAGCATCATCATTTCAGTTGTTAGAAAGCCGTGCCCA
ACGTGCTATGCGTGAAAATAACGTTTCTGGTGATTTGTCAGATTTAGTATTGGAAGAAGAGGAGCTCCCCTTTTAA
ATGTATAATAAAGTTATTATGATTGGGCGTCTAACAGCAAAGCCTGAGATGGTAAAAACACCAACTGACAAGTCAGTAAC
GCGTGCAACTGTTGCTGTTAATAGACGCTTTAAAGGAAGTAATGGTGAGCGTGAAGCAGATTTTATTAATGTGGTTATGT
GGGGTCGTCTAGCGGAAACCCTTGCGAGCTATGGGACAAAGGGCTCTTTAATTTCAATAGATGGTGAATTGCGTACGCGC
AAGTACGAAAAGGATGGTCAAACGCACTATATCACTGAAGTATTAGCATCATCATTTCAGTTGTTAGAAAGCCGTGCCCA
ACGTGCTATGCGTGAAAATAACGTTTCTGGTGATTTGTCAGATTTAGTATTGGAAGAAGAGGAGCTCCCCTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Streptococcus mutans UA159 |
80.916 |
100 |
0.809 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
77.863 |
100 |
0.779 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
77.863 |
100 |
0.779 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
77.863 |
100 |
0.779 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
77.099 |
100 |
0.771 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
77.099 |
100 |
0.771 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
76.336 |
100 |
0.763 |
| ssbB/cilA | Streptococcus mitis SK321 |
76.336 |
100 |
0.763 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
60.526 |
87.023 |
0.527 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50.943 |
80.916 |
0.412 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
46.018 |
86.26 |
0.397 |