Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   P8R98_RS11470 Genome accession   NZ_CP121159
Coordinates   2310727..2311122 (-) Length   131 a.a.
NCBI ID   WP_000282449.1    Uniprot ID   A0A0H1UUC1
Organism   Streptococcus agalactiae strain S1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2305727..2316122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R98_RS11445 lrgB 2306111..2306839 (-) 729 WP_000394889.1 antiholin-like protein LrgB -
  P8R98_RS11450 - 2306841..2307296 (-) 456 WP_000683315.1 CidA/LrgA family protein -
  P8R98_RS11455 - 2307466..2308206 (-) 741 WP_000697628.1 LytTR family transcriptional regulator DNA-binding domain-containing protein -
  P8R98_RS11460 - 2308187..2309932 (-) 1746 WP_000930335.1 LytS/YhcK type 5TM receptor domain-containing protein -
  P8R98_RS11465 - 2309959..2310603 (-) 645 WP_000416617.1 HAD family hydrolase -
  P8R98_RS11470 ssbA 2310727..2311122 (-) 396 WP_000282449.1 single-stranded DNA-binding protein Machinery gene
  P8R98_RS11475 - 2311203..2311919 (+) 717 WP_000186179.1 class I SAM-dependent methyltransferase -
  P8R98_RS11480 ytpR 2311973..2312599 (-) 627 WP_000578330.1 YtpR family tRNA-binding protein -
  P8R98_RS11485 - 2312632..2312955 (-) 324 WP_000602783.1 thioredoxin family protein -
  P8R98_RS11490 - 2312952..2313236 (-) 285 WP_000791272.1 DUF4651 domain-containing protein -
  P8R98_RS11495 - 2313397..2313636 (+) 240 WP_000660180.1 hypothetical protein -
  P8R98_RS11500 pepA 2313816..2314883 (+) 1068 WP_001281321.1 glutamyl aminopeptidase -
  P8R98_RS11505 proC 2314953..2315723 (+) 771 WP_001872483.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14760.77 Da        Isoelectric Point: 7.0189

>NTDB_id=810635 P8R98_RS11470 WP_000282449.1 2310727..2311122(-) (ssbA) [Streptococcus agalactiae strain S1]
MYNKVIMIGRLTAKPEMVKTPTDKSVTRATVAVNRRFKGSNGEREADFINVVMWGRLAETLASYGTKGSLISVDGELRTR
KYEKDGQTHYITEVLASSFQLLESRAQRAMRENNVSGDLSDLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=810635 P8R98_RS11470 WP_000282449.1 2310727..2311122(-) (ssbA) [Streptococcus agalactiae strain S1]
ATGTATAATAAAGTTATTATGATTGGGCGTCTAACAGCAAAGCCTGAGATGGTAAAAACACCAACTGACAAGTCAGTAAC
GCGTGCAACTGTTGCTGTTAATAGACGCTTTAAAGGAAGTAATGGTGAGCGTGAAGCAGATTTTATTAATGTGGTTATGT
GGGGTCGTCTAGCGGAAACCCTTGCGAGCTATGGGACAAAGGGCTCTTTAATTTCAGTAGATGGTGAATTGCGTACGCGC
AAGTACGAAAAGGATGGTCAAACGCACTATATCACTGAAGTATTAGCATCATCATTTCAGTTGCTAGAAAGCCGTGCCCA
ACGTGCTATGCGTGAAAATAACGTTTCTGGTGATTTGTCAGATTTAGTATTGGAAGAAGAGGAGCTCCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H1UUC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

80.916

100

0.809
  ssbB/cilA Streptococcus pneumoniae R6

78.626

100

0.786
  ssbB/cilA Streptococcus pneumoniae Rx1

78.626

100

0.786
  ssbB/cilA Streptococcus pneumoniae D39

78.626

100

0.786
  ssbB/cilA Streptococcus pneumoniae TIGR4

77.863

100

0.779
  ssbB Streptococcus sobrinus strain NIDR 6715-7

77.099

100

0.771
  ssbB/cilA Streptococcus mitis NCTC 12261

77.099

100

0.771
  ssbB/cilA Streptococcus mitis SK321

77.099

100

0.771
  ssbB Lactococcus lactis subsp. cremoris KW2

61.404

87.023

0.534
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.887

80.916

0.42
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405