Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RPM47_RS06220 Genome accession   NZ_CP135098
Coordinates   1327234..1328322 (-) Length   362 a.a.
NCBI ID   WP_003114641.1    Uniprot ID   Q9I7A6
Organism   Pseudomonas aeruginosa strain Paer2090     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1322234..1333322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPM47_RS06195 (RPM47_06195) - 1322562..1323548 (-) 987 WP_003097316.1 phospholipase -
  RPM47_RS06200 (RPM47_06200) aroE 1323659..1324483 (-) 825 WP_003111201.1 shikimate dehydrogenase -
  RPM47_RS06205 (RPM47_06205) hemF 1324541..1325458 (-) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  RPM47_RS06210 (RPM47_06210) - 1325649..1326626 (+) 978 WP_003111202.1 NADPH:quinone reductase -
  RPM47_RS06215 (RPM47_06215) - 1326636..1327193 (-) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  RPM47_RS06220 (RPM47_06220) dprA 1327234..1328322 (-) 1089 WP_003114641.1 DNA-processing protein DprA Machinery gene
  RPM47_RS06225 (RPM47_06225) tsaP 1328457..1329482 (-) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  RPM47_RS06230 (RPM47_06230) def 1329621..1330127 (+) 507 WP_003107059.1 peptide deformylase -
  RPM47_RS06235 (RPM47_06235) fmt 1330182..1331126 (+) 945 WP_003131369.1 methionyl-tRNA formyltransferase -
  RPM47_RS06240 (RPM47_06240) rsmB 1331123..1332427 (+) 1305 WP_003161949.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 37719.24 Da        Isoelectric Point: 7.0742

>NTDB_id=809504 RPM47_RS06220 WP_003114641.1 1327234..1328322(-) (dprA) [Pseudomonas aeruginosa strain Paer2090]
MKNHSPAELEARLRLHGLPELGPMRFLRLIEAFGSASSALAAPASAWRTLGVPAEAAAARRSPAVREAAGEALRWLEGLR
RHLLMWDDPGYPALLAEVADAPPLLYVEGAPETLERPQLAMVGSRRASPAGLGTARSFARSLAQGGFAITSGLALGIDGA
AHEGALEAGGATVAVLGTGLRRLYPRRHEALARRIVEGGGALVSELPLDSPPLPANFPRRNRIISGLSLGVLVVEASPAS
GSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGALLVESVGHVLEALRGWAQAEPAEAPAQPLPHPLLALLRAAP
YTSEGLAAASGMTLPDVLATLSELELDGRVACEAGTWVHRSG

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=809504 RPM47_RS06220 WP_003114641.1 1327234..1328322(-) (dprA) [Pseudomonas aeruginosa strain Paer2090]
ATGAAGAACCATTCTCCAGCCGAACTGGAAGCACGGCTGCGCCTGCATGGCCTGCCCGAACTGGGACCCATGCGCTTCCT
GCGCTTGATCGAGGCCTTCGGTTCGGCCTCTTCCGCGCTTGCCGCGCCAGCCAGCGCCTGGCGCACCCTGGGAGTGCCTG
CCGAGGCCGCCGCCGCGCGGCGCAGCCCGGCGGTGCGGGAAGCGGCGGGTGAAGCCCTGCGCTGGCTGGAAGGTCTGCGC
AGGCACCTGCTGATGTGGGACGACCCGGGATACCCGGCACTGCTCGCCGAAGTCGCCGATGCCCCGCCGCTGCTGTACGT
CGAAGGCGCTCCGGAGACTCTGGAACGGCCGCAACTGGCGATGGTCGGCAGCCGCCGCGCCAGCCCCGCCGGGCTGGGCA
CCGCCCGGAGCTTTGCGCGCAGCCTGGCGCAGGGCGGCTTCGCCATCACCAGCGGGCTGGCCCTGGGCATCGATGGCGCC
GCCCACGAGGGCGCGCTGGAGGCTGGCGGCGCGACCGTGGCAGTCCTCGGCACCGGCCTGCGCAGGCTCTATCCGCGGCG
CCACGAGGCGCTGGCGCGGCGCATCGTCGAGGGTGGCGGCGCGCTGGTTTCGGAGCTGCCGCTGGACAGCCCGCCGCTGC
CGGCAAACTTTCCCCGGCGCAACCGCATCATCAGCGGACTCTCGCTGGGTGTGCTGGTGGTCGAGGCAAGTCCCGCCAGC
GGCTCGCTGATCACCGCGCGGCTGGCGGCGGAACAGGGGCGCGAGGTGTACGCCATTCCGGGTTCCATCCACCATCCCGG
CGCACGTGGCTGCCACCAACTGATTCGCGATGGCGCGCTGCTGGTGGAAAGCGTCGGGCACGTGCTCGAAGCACTGCGCG
GCTGGGCGCAGGCGGAGCCAGCGGAAGCGCCGGCGCAGCCCCTGCCCCACCCTTTGCTGGCGCTGCTGCGCGCCGCGCCC
TACACCAGCGAAGGCCTGGCCGCCGCCAGCGGCATGACGCTGCCCGATGTGCTGGCGACGCTCAGCGAACTGGAACTCGA
CGGCCGGGTCGCCTGCGAGGCCGGCACCTGGGTGCATCGCTCCGGCTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(81-283)

DprA winged helix domain (WHD_DprA)

(297-355)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9I7A6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

43.514

100

0.445
  dprA Vibrio cholerae strain A1552

43.048

100

0.445
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

43.048

100

0.445
  dprA Legionella pneumophila strain ERS1305867

43.38

98.066

0.425
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.254

98.066

0.414
  dprA Neisseria gonorrhoeae strain FA1090

44.918

84.254

0.378
  dprA Neisseria gonorrhoeae MS11

44.59

84.254

0.376
  dprA Neisseria meningitidis MC58

46.416

80.939

0.376
  dprA Neisseria meningitidis strain C311

46.416

80.939

0.376
  dprA Acinetobacter baumannii D1279779

38.286

96.685

0.37
  dprA Glaesserella parasuis strain SC1401

46.853

79.006

0.37
  dprA Acinetobacter baumannii strain A118

38

96.685

0.367