Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   RMP67_RS00485 Genome accession   NZ_CP135087
Coordinates   92190..93107 (+) Length   305 a.a.
NCBI ID   WP_024383080.1    Uniprot ID   -
Organism   Streptococcus suis strain ID26102     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 87190..98107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP67_RS00460 (RMP67_00460) - 87475..87648 (+) 174 WP_011921669.1 hypothetical protein -
  RMP67_RS00465 (RMP67_00465) ruvB 87943..88947 (+) 1005 WP_024416935.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  RMP67_RS00470 (RMP67_00470) - 88947..89693 (+) 747 WP_024415611.1 GNAT family N-acetyltransferase -
  RMP67_RS00475 (RMP67_00475) - 89695..90333 (+) 639 WP_172011954.1 HAD-IA family hydrolase -
  RMP67_RS00480 (RMP67_00480) - 90623..91825 (-) 1203 WP_313921432.1 IS110 family transposase -
  RMP67_RS00485 (RMP67_00485) comR 92190..93107 (+) 918 WP_024383080.1 helix-turn-helix domain-containing protein Regulator
  RMP67_RS00490 (RMP67_00490) - 93373..94593 (+) 1221 WP_313920896.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  RMP67_RS00495 (RMP67_00495) - 94784..96307 (+) 1524 WP_024381981.1 quinol oxidase -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 36253.31 Da        Isoelectric Point: 4.6318

>NTDB_id=808798 RMP67_RS00485 WP_024383080.1 92190..93107(+) (comR) [Streptococcus suis strain ID26102]
MNDKEFGQRVRQLRESASMTREQFCDDELELSVRQLTRIEAGASKPTFSKIQYIATRLGMGLYELMPDYVSLPERYSKLK
FDVLRTPTYGNEDLAEKRDAMMTEIYDDYYDELPEEEKIVVDTLCSLFDVLDTDSQEYGKEILDDYLHQSYHRSKLSIND
LMILRLFIEHCQLEDLSVGTSNYALFTDLIEKLPQSIYDVHSESLFIVRDLFLAIVRILFSKELYDHIPVYIEKIENIME
LSQDFQKKPILNLVKWKYELKVQHNHEIAERYYNEAITFASLLNQFHLKEKLQMEWEKDTQSLKR

Nucleotide


Download         Length: 918 bp        

>NTDB_id=808798 RMP67_RS00485 WP_024383080.1 92190..93107(+) (comR) [Streptococcus suis strain ID26102]
ATGAACGATAAGGAATTTGGACAGCGTGTACGTCAATTACGAGAATCTGCTAGTATGACACGTGAACAGTTTTGTGACGA
TGAACTGGAACTCTCTGTGCGCCAATTAACTCGTATTGAAGCAGGTGCTTCCAAGCCGACTTTTTCAAAGATTCAGTATA
TTGCAACTCGTTTAGGTATGGGACTTTACGAGCTTATGCCAGATTATGTATCTTTACCCGAAAGATATTCCAAGCTGAAG
TTTGATGTGCTTCGCACCCCAACTTATGGTAATGAAGATTTGGCGGAAAAGCGAGATGCCATGATGACAGAAATCTATGA
CGATTACTATGATGAATTGCCTGAGGAGGAGAAGATAGTTGTAGATACCCTATGTTCCCTATTTGATGTATTGGATACAG
ATAGCCAGGAATACGGTAAAGAAATTCTTGATGATTATTTACATCAAAGCTATCACCGTTCCAAACTATCTATAAACGAT
TTAATGATTTTGCGATTATTTATTGAACATTGTCAGTTGGAGGATTTATCTGTTGGAACTTCCAATTATGCTTTATTTAC
AGATTTGATAGAGAAATTGCCTCAATCAATCTATGATGTACATTCGGAATCCTTATTCATTGTCCGCGATTTATTTCTAG
CTATTGTTCGTATTTTATTTTCGAAGGAGTTGTATGATCATATTCCAGTCTATATAGAAAAAATAGAAAACATCATGGAA
TTATCACAAGATTTTCAGAAGAAGCCAATTCTAAATCTTGTGAAATGGAAGTATGAATTAAAGGTACAACATAATCATGA
AATTGCTGAGAGGTACTATAATGAAGCGATTACATTTGCCAGCCTACTAAATCAATTTCACTTGAAAGAAAAACTGCAAA
TGGAATGGGAAAAAGATACGCAGAGTCTAAAAAGATGA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(73-296)

Helix-turn-helix domain (HTH_31)

(5-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus suis D9

99.672

100

0.997
  comR Streptococcus suis P1/7

62.126

98.689

0.613
  comR Streptococcus suis 05ZYH33

62.126

98.689

0.613
  comR Streptococcus mutans UA159

37.333

98.361

0.367