Detailed information NTG0808797

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: RMP67_RS00465
• Genome accession: NZ_CP135087
• Coordinates: 87943..88947 (+)
• Length: 334 a.a.
• NCBI ID: WP_024416935.1
• Uniprot ID: -
• Organism: Streptococcus suis strain ID26102
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 82943..93947

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RMP67_RS00435 (RMP67_00435)	-	82993..83571 (+)	579	WP_313920894.1	CPBP family intramembrane glutamic endopeptidase	-
RMP67_RS00440 (RMP67_00440)	-	83586..84014 (+)	429	WP_024403275.1	Msa family membrane protein	-
RMP67_RS00445 (RMP67_00445)	-	84007..84879 (+)	873	WP_015646233.1	ABC transporter ATP-binding protein	-
RMP67_RS00450 (RMP67_00450)	-	84885..85658 (+)	774	WP_313920895.1	hypothetical protein	-
RMP67_RS00455 (RMP67_00455)	-	85661..87373 (+)	1713	WP_014917170.1	ABC transporter ATP-binding protein	-
RMP67_RS00460 (RMP67_00460)	-	87475..87648 (+)	174	WP_011921669.1	hypothetical protein	-
RMP67_RS00465 (RMP67_00465)	ruvB	87943..88947 (+)	1005	WP_024416935.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
RMP67_RS00470 (RMP67_00470)	-	88947..89693 (+)	747	WP_024415611.1	GNAT family N-acetyltransferase	-
RMP67_RS00475 (RMP67_00475)	-	89695..90333 (+)	639	WP_172011954.1	HAD-IA family hydrolase	-
RMP67_RS00480 (RMP67_00480)	-	90623..91825 (-)	1203	WP_313921432.1	IS110 family transposase	-
RMP67_RS00485 (RMP67_00485)	comR	92190..93107 (+)	918	WP_024383080.1	helix-turn-helix domain-containing protein	Regulator

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 37742.24 Da
• Isoelectric Point: 4.4407

>NTDB_id=808797 RMP67_RS00465 WP_024416935.1 87943..88947(+) (ruvB) [Streptococcus suis strain ID26102]
MTNRILDMEQMQDEEYVERTLRPQKLNEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN
IKQTSGPVIEKAGDLVALLNDLEPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAGEASRSVHLELPPFTLIGATT
RAGMLSNPLRARFGITGHMEYYELADLTEIVERTADIFDMEITHEAAIELARRSRGTPRIANRLLKRVRDFAQIMGDGLI
DDSITDKALTMLDVDREGLDYVDQKILRTMIEMYGGGPVGLNTLSVNIAEERETVEDMYEPYLIQQGFLMRTRTGRVATA
KAYEHLGYPYTEEK

Nucleotide

• Length: 1005 bp

>NTDB_id=808797 RMP67_RS00465 WP_024416935.1 87943..88947(+) (ruvB) [Streptococcus suis strain ID26102]
ATGACAAATCGAATTTTAGATATGGAACAAATGCAGGACGAGGAATATGTCGAGCGTACCCTGCGTCCGCAGAAATTAAA
CGAATACATCGGTCAGGACAAGGTTAAGGACCAGCTCAAAATCTTTATCGAGGCAGCCAAGCTCCGTGATGAAGCCTTGG
ACCATACCCTTCTGTTTGGACCTCCAGGTTTGGGGAAGACCACCATGGCCTTTGTCATCGCCAACGAACTGGGCGTTAAT
ATCAAGCAGACTAGTGGTCCTGTTATTGAAAAAGCAGGTGACTTGGTGGCCCTTCTCAACGACTTGGAGCCTGGCGACGT
CCTCTTTATCGATGAAATCCACCGTATGCCCATGGCGGTCGAGGAGATTCTCTACTCAGCCATGGAAGACTTCTACATCG
ACATCATGATTGGGGCTGGGGAGGCCAGTCGCTCCGTGCATTTGGAGTTGCCGCCTTTTACCCTGATTGGAGCGACCACT
CGTGCGGGTATGCTGTCCAATCCCCTGCGGGCCCGATTTGGGATTACCGGTCATATGGAGTATTACGAACTGGCTGATTT
GACGGAGATTGTCGAGCGGACGGCGGATATCTTTGACATGGAGATTACTCATGAAGCTGCTATTGAGCTGGCTCGTCGGT
CTCGTGGAACTCCCCGTATCGCCAACCGTCTGCTCAAGCGGGTGCGGGATTTCGCACAGATTATGGGCGACGGCCTGATT
GACGATAGCATTACGGATAAGGCCCTGACTATGCTGGATGTGGACCGAGAGGGGCTGGACTATGTGGACCAGAAGATTCT
CCGCACCATGATTGAGATGTACGGTGGCGGTCCCGTCGGCCTCAACACCCTGTCGGTCAATATTGCCGAGGAGCGTGAGA
CGGTGGAGGACATGTACGAACCTTACCTGATTCAGCAGGGCTTCCTCATGCGGACGCGGACAGGGCGGGTTGCGACAGCC
AAGGCTTACGAGCACTTGGGTTATCCCTATACGGAGGAAAAATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (182-255)

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	90.03	99.102	0.892
ruvB	Streptococcus pneumoniae R6	89.728	99.102	0.889
ruvB	Streptococcus pneumoniae D39	89.728	99.102	0.889
ruvB	Bacillus subtilis subsp. subtilis str. 168	58.589	97.605	0.572
ruvB	Helicobacter pylori 26695	51.064	98.503	0.503
ruvB	Synechocystis sp. PCC 6803	50.479	93.713	0.473