Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   RMP67_RS00360 Genome accession   NZ_CP135087
Coordinates   63753..64535 (+) Length   260 a.a.
NCBI ID   WP_014637252.1    Uniprot ID   -
Organism   Streptococcus suis strain ID26102     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 58753..69535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP67_RS00340 (RMP67_00340) mreD 59601..60089 (+) 489 WP_014637249.1 rod shape-determining protein MreD -
  RMP67_RS00345 (RMP67_00345) pcsB 60174..61430 (+) 1257 WP_313920879.1 peptidoglycan hydrolase PcsB -
  RMP67_RS00350 (RMP67_00350) - 61533..62501 (+) 969 WP_313920880.1 ribose-phosphate diphosphokinase -
  RMP67_RS00355 (RMP67_00355) - 62588..63766 (+) 1179 WP_313920881.1 pyridoxal phosphate-dependent aminotransferase -
  RMP67_RS00360 (RMP67_00360) recO 63753..64535 (+) 783 WP_014637252.1 DNA repair protein RecO Machinery gene
  RMP67_RS00365 (RMP67_00365) plsX 64532..65539 (+) 1008 WP_313920882.1 phosphate acyltransferase PlsX -
  RMP67_RS00370 (RMP67_00370) - 65532..65780 (+) 249 WP_014637254.1 phosphopantetheine-binding protein -
  RMP67_RS00375 (RMP67_00375) purC 65898..66605 (+) 708 WP_313920883.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 30452.95 Da        Isoelectric Point: 5.4193

>NTDB_id=808796 RMP67_RS00360 WP_014637252.1 63753..64535(+) (recO) [Streptococcus suis strain ID26102]
MERIETRGLVLYNRNFREDDKLVKIFTEKAGKRMFFVKHASKSKLVASIQPLTYADFIVKINDDGLSYIEDFHQVQPFKN
INGDIFKLSYATYILALADAALQDKVYDPALFAFLVKTLDLMESGLDYEVLTNIFEIQLLGRFGISLNFHECAFCHRVGL
PFDYSYKYSGVLCPQHYQQDERRAYLDPNVPYLLDQFQAISFDELETISIKPEMKRKLRLFIDQLYEEYVGIHLKSKKFI
DDLSSWGQIMKPRTENEETE

Nucleotide


Download         Length: 783 bp        

>NTDB_id=808796 RMP67_RS00360 WP_014637252.1 63753..64535(+) (recO) [Streptococcus suis strain ID26102]
ATGGAACGAATTGAAACCAGGGGATTAGTCCTATATAATCGGAATTTTCGAGAAGATGACAAGCTGGTCAAGATTTTTAC
AGAGAAGGCTGGCAAGCGAATGTTTTTCGTGAAACATGCCTCTAAATCCAAGCTGGTAGCTTCTATCCAGCCTTTGACCT
ATGCGGATTTTATCGTTAAAATCAATGATGATGGGCTGTCTTATATCGAAGATTTTCATCAGGTACAGCCCTTTAAGAAT
ATTAACGGTGATATTTTCAAGCTTAGCTATGCTACCTATATCTTGGCCTTGGCCGATGCGGCCTTGCAGGACAAGGTCTA
TGACCCAGCTCTCTTTGCTTTTTTGGTCAAGACCTTGGACTTGATGGAGTCAGGTTTGGACTACGAAGTTCTGACCAATA
TCTTTGAAATTCAGCTCTTGGGTCGATTTGGGATCAGTCTGAATTTTCACGAGTGTGCTTTTTGTCATCGGGTTGGCTTG
CCTTTTGACTATTCCTATAAGTACAGCGGTGTTTTGTGTCCGCAACATTATCAACAAGATGAGCGACGGGCTTATCTGGA
TCCAAATGTTCCCTATCTACTTGATCAATTTCAGGCTATTTCCTTTGATGAGCTGGAAACCATTTCCATCAAGCCTGAGA
TGAAGCGAAAATTACGGCTTTTTATTGACCAGCTGTACGAGGAATATGTGGGGATTCACTTGAAATCCAAGAAATTTATA
GATGATTTGTCTTCTTGGGGGCAGATTATGAAACCAAGAACAGAAAATGAGGAAACAGAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-237)

Recombination protein O N terminal (RecO_N)

(1-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

69.721

96.538

0.673