Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   P3R60_RS05370 Genome accession   NZ_CP120510
Coordinates   1033743..1034138 (-) Length   131 a.a.
NCBI ID   WP_218653905.1    Uniprot ID   -
Organism   Streptococcus pluranimalium strain SP21-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1028743..1039138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3R60_RS05350 - 1029640..1030320 (-) 681 WP_115129555.1 response regulator transcription factor -
  P3R60_RS05355 - 1030330..1031634 (-) 1305 WP_316605952.1 sensor histidine kinase -
  P3R60_RS05360 - 1031634..1032599 (-) 966 WP_278024858.1 substrate-binding domain-containing protein -
  P3R60_RS05365 - 1032680..1033477 (-) 798 WP_278024857.1 Cof-type HAD-IIB family hydrolase -
  P3R60_RS05370 ssbA 1033743..1034138 (-) 396 WP_218653905.1 single-stranded DNA-binding protein Machinery gene
  P3R60_RS05375 - 1034202..1034333 (+) 132 Protein_1052 class I SAM-dependent methyltransferase -
  P3R60_RS05380 ytpR 1034456..1035082 (-) 627 WP_218653904.1 YtpR family tRNA-binding protein -
  P3R60_RS05385 - 1035089..1035403 (-) 315 WP_316605953.1 thioredoxin family protein -
  P3R60_RS05390 - 1035400..1035756 (-) 357 WP_370627298.1 DUF4651 domain-containing protein -
  P3R60_RS05395 - 1035873..1036073 (+) 201 WP_104967117.1 cold-shock protein -
  P3R60_RS05400 pepA 1036218..1037282 (+) 1065 WP_316605954.1 glutamyl aminopeptidase -
  P3R60_RS05405 proC 1037321..1038091 (+) 771 WP_316605955.1 pyrroline-5-carboxylate reductase -
  P3R60_RS05410 - 1038136..1038807 (-) 672 WP_316605956.1 type II CAAX endopeptidase family protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14809.82 Da        Isoelectric Point: 5.9496

>NTDB_id=805851 P3R60_RS05370 WP_218653905.1 1033743..1034138(-) (ssbA) [Streptococcus pluranimalium strain SP21-2]
MYNKTILIGRLVATPEIVKTPNDKSVARVTVAVNRRFKSKDGEREADFVNVVFWGRLAETLASYGTKGSLISLDGELRTR
SYEKDGQKHYMTEVLGQSFQLLESRAQRAMRENNVAADLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=805851 P3R60_RS05370 WP_218653905.1 1033743..1034138(-) (ssbA) [Streptococcus pluranimalium strain SP21-2]
ATGTATAATAAAACGATTTTAATTGGCCGCTTGGTAGCTACGCCTGAGATAGTGAAGACGCCTAATGATAAGTCTGTGGC
ACGTGTGACGGTTGCTGTCAATCGCCGCTTTAAGTCTAAGGATGGCGAGCGTGAAGCAGATTTTGTCAATGTAGTCTTTT
GGGGACGTTTGGCAGAAACACTGGCTTCTTACGGGACCAAGGGTAGTTTGATTTCATTGGATGGAGAGTTGCGAACGCGC
TCATATGAAAAAGACGGGCAAAAACACTATATGACAGAAGTCTTAGGACAATCCTTCCAATTGCTAGAAAGTCGTGCTCA
ACGTGCCATGCGTGAGAATAACGTAGCAGCAGACTTAGCGGATCTAGTGCTGGAAGAAGAGGAGCTACCCTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

84.733

100

0.847
  ssbB/cilA Streptococcus pneumoniae TIGR4

78.626

100

0.786
  ssbB/cilA Streptococcus pneumoniae Rx1

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae D39

77.863

100

0.779
  ssbB/cilA Streptococcus mitis SK321

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae R6

77.863

100

0.779
  ssbB Streptococcus sobrinus strain NIDR 6715-7

77.863

100

0.779
  ssbB/cilA Streptococcus mitis NCTC 12261

76.336

100

0.763
  ssbB Lactococcus lactis subsp. cremoris KW2

64.035

87.023

0.557
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405
  ssb Latilactobacillus sakei subsp. sakei 23K

42.373

90.076

0.382