Detailed information NTG0805186

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: PVE35_RS03730
• Genome accession: NZ_CP120359
• Coordinates: 810866..812086 (-)
• Length: 406 a.a.
• NCBI ID: WP_277373843.1
• Uniprot ID: -
• Organism: Pseudomonas sp. AA-38
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 805866..817086

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PVE35_RS03710	-	807030..807449 (+)	420	WP_268181376.1	hypothetical protein	-
PVE35_RS03715	-	807476..808288 (+)	813	WP_277373840.1	YdcF family protein	-
PVE35_RS03720	lnt	808374..809897 (-)	1524	WP_277373841.1	apolipoprotein N-acyltransferase	-
PVE35_RS03725	pilD	809993..810862 (-)	870	WP_277373842.1	A24 family peptidase	Machinery gene
PVE35_RS03730	pilC	810866..812086 (-)	1221	WP_277373843.1	type II secretion system F family protein	Machinery gene
PVE35_RS03735	pilB	812089..813792 (-)	1704	WP_277373844.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PVE35_RS03740	-	814018..814359 (+)	342	WP_277373845.1	pilin	-
PVE35_RS03745	-	814466..815782 (+)	1317	WP_277373846.1	sulfatase-like hydrolase/transferase	-
PVE35_RS03750	-	815764..816714 (+)	951	WP_277373847.1	O-antigen ligase family protein	-

Sequence

Protein

• Length: 406 a.a.
• Molecular weight: 43900.67 Da
• Isoelectric Point: 9.9510

>NTDB_id=805186 PVE35_RS03730 WP_277373843.1 810866..812086(-) (pilC) [Pseudomonas sp. AA-38]
MAAKALKTSVFTWEGKNKSGAVVKGEINGQNPSLVKAQLRKQGINPTKVRKKSSISFGGGKKIKPMDIALFTRQMATMMK
AGVPLLQSFDIIAEGFDNPNMRKLVEELKQEVAAGNSFASALRKQPQYFDDLYCNLVDSGEQSGALETLLDRVATYKEKT
EALKAKIKKAMTYPIAVIVVALIVSAILLIKVVPAFESVFAGFGAELPAFTQMVVGLSVMLREWWIIVLAGLLLLAFALK
EANKRSAKFRDGKDRLLLKVPIVGDILYKSAVARFARTLSTTFAAGVPLVDALDSVAGATGNVVFRNAVNKIKTDVSSGT
QLNFSMRTTDVFPTLAVQMTAIGEESGALDEMLSKVATFYEEEVDNMVDNLTSLMEPMIMAVLGVLVGGLVIAMYLPIFQ
LGNVVG

Nucleotide

• Length: 1221 bp

>NTDB_id=805186 PVE35_RS03730 WP_277373843.1 810866..812086(-) (pilC) [Pseudomonas sp. AA-38]
ATGGCGGCAAAAGCTCTGAAAACCAGCGTATTCACCTGGGAAGGCAAGAACAAAAGCGGCGCGGTCGTCAAAGGCGAGAT
CAATGGGCAGAATCCGTCTCTGGTCAAGGCGCAACTGCGCAAGCAGGGCATCAACCCGACCAAGGTGCGCAAGAAATCGA
GCATTTCCTTCGGCGGTGGCAAGAAGATCAAGCCCATGGACATTGCTCTGTTCACCCGGCAGATGGCGACCATGATGAAG
GCCGGCGTGCCTTTGCTGCAGTCCTTCGACATCATTGCCGAGGGCTTCGACAACCCTAACATGCGCAAGCTGGTCGAGGA
GCTCAAGCAAGAAGTAGCGGCAGGCAACAGCTTCGCATCGGCGCTACGCAAACAGCCGCAATACTTCGATGATCTTTATT
GCAACCTTGTGGACTCCGGCGAACAGTCTGGCGCCCTGGAAACCCTGCTGGATCGGGTAGCGACCTACAAGGAAAAAACC
GAGGCACTCAAGGCCAAGATCAAGAAGGCCATGACATATCCGATCGCAGTGATAGTGGTTGCCCTCATTGTCTCTGCTAT
TCTTTTGATCAAAGTCGTACCCGCCTTCGAGTCGGTATTCGCTGGTTTCGGTGCCGAGCTTCCTGCCTTCACTCAGATGG
TCGTCGGACTTTCTGTAATGCTCCGGGAGTGGTGGATCATCGTACTGGCTGGCCTTCTTTTACTGGCTTTTGCTCTGAAG
GAAGCTAACAAACGATCCGCAAAGTTCAGAGACGGCAAAGACAGGCTATTGCTGAAAGTCCCGATTGTCGGAGACATTCT
CTACAAATCAGCGGTCGCTCGCTTCGCCCGTACACTCTCGACGACTTTTGCGGCTGGTGTTCCGCTGGTAGACGCCTTGG
ACTCAGTAGCAGGGGCCACGGGTAACGTTGTGTTCCGCAATGCCGTGAACAAGATCAAGACGGACGTATCCAGCGGTACT
CAGCTCAATTTTTCCATGCGCACGACTGATGTTTTCCCGACGCTGGCGGTGCAGATGACCGCCATTGGCGAGGAGTCTGG
AGCCCTCGATGAGATGCTGAGCAAGGTCGCCACCTTTTATGAAGAAGAAGTCGACAATATGGTCGATAACCTGACCAGTC
TGATGGAGCCCATGATCATGGCTGTCCTAGGCGTGCTGGTTGGTGGCCTGGTTATTGCCATGTACCTGCCAATCTTCCAG
CTGGGTAATGTAGTCGGCTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (71-194)

• Type II secretion system (T2SS), protein F (T2SSF) (275-397)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	81.975	99.754	0.818
pilC	Acinetobacter baylyi ADP1	60.784	100	0.611
pilC	Acinetobacter baumannii D1279779	60.644	99.507	0.603
pilC	Legionella pneumophila strain ERS1305867	53.788	97.537	0.525
pilG	Neisseria gonorrhoeae MS11	45.274	99.015	0.448
pilG	Neisseria meningitidis 44/76-A	45.274	99.015	0.448
pilC	Vibrio cholerae strain A1552	42.752	100	0.429
pilC	Vibrio campbellii strain DS40M4	43.467	98.03	0.426
pilC	Thermus thermophilus HB27	36.973	99.261	0.367