Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   PVE35_RS03725 Genome accession   NZ_CP120359
Coordinates   809993..810862 (-) Length   289 a.a.
NCBI ID   WP_277373842.1    Uniprot ID   -
Organism   Pseudomonas sp. AA-38     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 804993..815862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVE35_RS03710 - 807030..807449 (+) 420 WP_268181376.1 hypothetical protein -
  PVE35_RS03715 - 807476..808288 (+) 813 WP_277373840.1 YdcF family protein -
  PVE35_RS03720 lnt 808374..809897 (-) 1524 WP_277373841.1 apolipoprotein N-acyltransferase -
  PVE35_RS03725 pilD 809993..810862 (-) 870 WP_277373842.1 A24 family peptidase Machinery gene
  PVE35_RS03730 pilC 810866..812086 (-) 1221 WP_277373843.1 type II secretion system F family protein Machinery gene
  PVE35_RS03735 pilB 812089..813792 (-) 1704 WP_277373844.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PVE35_RS03740 - 814018..814359 (+) 342 WP_277373845.1 pilin -
  PVE35_RS03745 - 814466..815782 (+) 1317 WP_277373846.1 sulfatase-like hydrolase/transferase -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 31910.82 Da        Isoelectric Point: 6.8833

>NTDB_id=805185 PVE35_RS03725 WP_277373842.1 809993..810862(-) (pilD) [Pseudomonas sp. AA-38]
MDLFNFLASHTLAFACCALLLGLLIGSFLNVVVYRLPLMLQRDWREQAREVLELPAEPRQATFNLILPNSSCPHCGHEIR
PWENVPLLSYLALRGKCSNCKAAISKRYPIVELACGLLSAYIAWHFGFTWQAGAMLLLSWGLLAMSLIDADHQILPDVLV
LPLLWLGLMVNHFGLFTSLEDALWGAIAGYLSLWSVYWLFKLITGKEGMGHGDFKLLAMIGAWGGWQVLPLTILLSSLVG
AVLGVILLRLRGSDTSTPIPFGPYLAIAGWIALLWGDAITSSYLHFAGF

Nucleotide


Download         Length: 870 bp        

>NTDB_id=805185 PVE35_RS03725 WP_277373842.1 809993..810862(-) (pilD) [Pseudomonas sp. AA-38]
ATGGATCTCTTCAACTTTCTGGCCAGCCACACGCTGGCCTTCGCTTGCTGCGCCCTGCTGCTGGGCCTGTTGATCGGCAG
CTTTCTCAATGTAGTGGTCTACCGCCTGCCGCTGATGCTGCAGCGCGATTGGCGGGAGCAGGCGCGTGAGGTACTGGAGC
TGCCTGCCGAACCCAGGCAGGCCACCTTCAACCTGATCCTGCCCAATTCCAGCTGCCCCCACTGCGGTCACGAGATTCGC
CCCTGGGAGAACGTTCCGCTGCTCAGCTATCTGGCGCTGCGCGGCAAGTGCTCCAACTGCAAGGCGGCCATTAGCAAGCG
TTACCCCATTGTGGAGCTGGCCTGCGGCCTGCTTTCGGCTTATATCGCCTGGCATTTCGGCTTCACCTGGCAGGCTGGCG
CCATGCTGCTGCTGAGCTGGGGCCTGCTGGCGATGAGCCTGATCGACGCCGACCACCAGATTCTGCCGGACGTACTGGTA
CTGCCCCTGCTCTGGCTCGGCCTGATGGTCAACCACTTCGGCCTGTTCACCAGCCTGGAAGATGCCCTGTGGGGCGCCAT
TGCCGGTTATCTGAGCCTGTGGTCGGTGTACTGGTTGTTCAAGCTGATCACCGGCAAGGAAGGCATGGGTCACGGCGACT
TCAAGCTGCTGGCCATGATCGGCGCCTGGGGCGGCTGGCAGGTGCTGCCGCTGACCATCCTGCTGTCGTCCCTGGTCGGT
GCGGTGCTGGGGGTAATCCTTCTGCGCCTGCGCGGCAGTGACACCAGCACGCCCATCCCCTTCGGCCCCTACCTGGCCAT
CGCCGGCTGGATCGCCCTGCTCTGGGGCGATGCCATCACCTCCAGCTATCTGCACTTCGCCGGATTCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(137-245)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

54.545

98.962

0.54
  pilD Vibrio campbellii strain DS40M4

50

98.962

0.495
  pilD Acinetobacter nosocomialis M2

49.474

98.616

0.488
  pilD Acinetobacter baumannii D1279779

49.123

98.616

0.484
  pilD Neisseria gonorrhoeae MS11

47.529

91.003

0.433