Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   P3G59_RS24720 Genome accession   NZ_CP119967
Coordinates   5538175..5539392 (+) Length   405 a.a.
NCBI ID   WP_277759333.1    Uniprot ID   -
Organism   Pseudomonas sp. A34-9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5533175..5544392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3G59_RS24700 - 5534574..5534870 (+) 297 WP_277762201.1 DUF2845 domain-containing protein -
  P3G59_RS24705 - 5535156..5535512 (-) 357 WP_242207033.1 BON domain-containing protein -
  P3G59_RS24710 - 5535809..5536246 (-) 438 WP_277759331.1 pilin -
  P3G59_RS24715 pilB 5536472..5538172 (+) 1701 WP_277759332.1 type IV-A pilus assembly ATPase PilB Machinery gene
  P3G59_RS24720 pilC 5538175..5539392 (+) 1218 WP_277759333.1 type II secretion system F family protein Machinery gene
  P3G59_RS24725 pilD 5539394..5540266 (+) 873 WP_277759334.1 A24 family peptidase Machinery gene
  P3G59_RS24730 coaE 5540263..5540886 (+) 624 WP_277759335.1 dephospho-CoA kinase -
  P3G59_RS24735 yacG 5540883..5541083 (+) 201 WP_007959585.1 DNA gyrase inhibitor YacG -
  P3G59_RS24740 - 5541089..5541304 (-) 216 WP_277759336.1 hypothetical protein -
  P3G59_RS24745 - 5541370..5542059 (-) 690 WP_277759337.1 energy-coupling factor ABC transporter permease -
  P3G59_RS24750 - 5542251..5542877 (+) 627 WP_008078503.1 DUF1780 domain-containing protein -
  P3G59_RS24755 - 5542874..5543401 (+) 528 WP_277759338.1 MOSC domain-containing protein -
  P3G59_RS24760 - 5543453..5543626 (+) 174 WP_003228304.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44088.89 Da        Isoelectric Point: 10.1648

>NTDB_id=801254 P3G59_RS24720 WP_277759333.1 5538175..5539392(+) (pilC) [Pseudomonas sp. A34-9]
MAVKAAKISIYAWEGTDRKGSKVTGELSGQNPALIKAQLRKQGINPGKVRKKSASLLIFGKRIKAQDIALFTRQMATMMK
AGVPLLQSFDIIGEGFENPAMRKLVDEVKQEVAAGNSFATALRKKPQYFDELYCNLVDAGEQSGALDTLLERVATYKEKS
ERLKAKIKKAMTYPTAVVLVAAVVTGILLVKVVPQFQSVFSGFGAELPAFTLMVISLSEFMQQWWWAVLGALVAAIFGTR
HALKKSPALRDRKDTWLLKVPLVGTLMYKSAVARFARTLSTTFAAGVPLVEALDSVAGATGNVVFKRAVLRIRQDVSTGM
QLNFSMRSTGVFPNMAVQMTAIGEESGALDEMLDKVAGFYEEEVDNMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=801254 P3G59_RS24720 WP_277759333.1 5538175..5539392(+) (pilC) [Pseudomonas sp. A34-9]
ATGGCGGTCAAGGCAGCGAAAATCAGTATTTATGCCTGGGAAGGTACGGACAGGAAAGGCAGCAAAGTCACCGGTGAACT
CAGCGGACAGAATCCGGCACTGATCAAGGCACAACTGCGTAAACAAGGGATCAATCCCGGCAAGGTGCGCAAAAAATCCG
CGTCGTTGTTGATTTTTGGCAAACGCATAAAGGCCCAGGACATCGCTCTGTTCACCCGGCAAATGGCGACCATGATGAAG
GCCGGTGTGCCGCTGCTGCAGTCGTTCGACATCATTGGTGAAGGCTTTGAAAACCCGGCCATGCGCAAGCTGGTGGACGA
GGTCAAACAGGAGGTCGCGGCCGGTAACAGCTTCGCCACAGCCCTGCGCAAGAAACCGCAATATTTCGACGAGCTGTATT
GCAACCTGGTCGATGCGGGCGAGCAGTCCGGCGCCCTCGACACGTTGCTGGAACGGGTCGCGACCTATAAGGAAAAAAGC
GAACGGCTAAAGGCCAAGATCAAAAAAGCCATGACCTACCCCACCGCCGTGGTGCTGGTGGCGGCAGTCGTGACCGGAAT
TCTGCTGGTCAAAGTGGTGCCGCAGTTTCAGTCGGTGTTTTCCGGTTTCGGCGCTGAGCTGCCGGCCTTCACCCTGATGG
TGATCAGCCTGTCGGAATTCATGCAGCAATGGTGGTGGGCGGTTCTCGGTGCGCTGGTCGCGGCGATCTTCGGTACCCGC
CATGCACTGAAAAAATCTCCGGCGTTACGCGATCGCAAAGACACCTGGCTGTTGAAAGTGCCCCTGGTTGGCACGCTGAT
GTACAAGTCCGCCGTGGCGCGATTCGCTCGAACCCTGTCGACCACATTCGCTGCCGGTGTGCCGCTGGTGGAAGCGCTCG
ACTCAGTGGCCGGCGCCACCGGCAATGTGGTGTTCAAGCGTGCCGTGCTGCGCATTCGCCAGGACGTCTCCACCGGCATG
CAGTTGAATTTTTCGATGCGCAGCACCGGGGTCTTTCCCAACATGGCCGTGCAGATGACCGCGATCGGCGAAGAGTCCGG
CGCGCTGGACGAGATGCTCGACAAGGTCGCGGGGTTTTACGAAGAGGAAGTGGATAACATGGTCGACAACCTCACCAGCC
TTATGGAGCCATTCATCATGGTGGTGCTGGGGGTGATCGTCGGTGGGCTGGTCGTGGCCATGTACCTGCCGATTTTTCAA
CTCGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

74.815

100

0.748
  pilC Acinetobacter baumannii D1279779

59.314

100

0.598
  pilC Acinetobacter baylyi ADP1

59.069

100

0.595
  pilC Legionella pneumophila strain ERS1305867

53.535

97.778

0.523
  pilC Vibrio cholerae strain A1552

44.444

97.778

0.435
  pilG Neisseria gonorrhoeae MS11

43.672

99.506

0.435
  pilG Neisseria meningitidis 44/76-A

43.176

99.506

0.43
  pilC Vibrio campbellii strain DS40M4

41.379

100

0.415
  pilC Thermus thermophilus HB27

38.404

99.012

0.38