Detailed information NTG0801255

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: P3G59_RS24725
• Genome accession: NZ_CP119967
• Coordinates: 5539394..5540266 (+)
• Length: 290 a.a.
• NCBI ID: WP_277759334.1
• Uniprot ID: -
• Organism: Pseudomonas sp. A34-9
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5534394..5545266

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P3G59_RS24700	-	5534574..5534870 (+)	297	WP_277762201.1	DUF2845 domain-containing protein	-
P3G59_RS24705	-	5535156..5535512 (-)	357	WP_242207033.1	BON domain-containing protein	-
P3G59_RS24710	-	5535809..5536246 (-)	438	WP_277759331.1	pilin	-
P3G59_RS24715	pilB	5536472..5538172 (+)	1701	WP_277759332.1	type IV-A pilus assembly ATPase PilB	Machinery gene
P3G59_RS24720	pilC	5538175..5539392 (+)	1218	WP_277759333.1	type II secretion system F family protein	Machinery gene
P3G59_RS24725	pilD	5539394..5540266 (+)	873	WP_277759334.1	A24 family peptidase	Machinery gene
P3G59_RS24730	coaE	5540263..5540886 (+)	624	WP_277759335.1	dephospho-CoA kinase	-
P3G59_RS24735	yacG	5540883..5541083 (+)	201	WP_007959585.1	DNA gyrase inhibitor YacG	-
P3G59_RS24740	-	5541089..5541304 (-)	216	WP_277759336.1	hypothetical protein	-
P3G59_RS24745	-	5541370..5542059 (-)	690	WP_277759337.1	energy-coupling factor ABC transporter permease	-
P3G59_RS24750	-	5542251..5542877 (+)	627	WP_008078503.1	DUF1780 domain-containing protein	-
P3G59_RS24755	-	5542874..5543401 (+)	528	WP_277759338.1	MOSC domain-containing protein	-
P3G59_RS24760	-	5543453..5543626 (+)	174	WP_003228304.1	DUF3094 family protein	-
P3G59_RS24765	-	5543690..5544988 (+)	1299	WP_016986237.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32477.79 Da
• Isoelectric Point: 7.6846

>NTDB_id=801255 P3G59_RS24725 WP_277759334.1 5539394..5540266(+) (pilD) [Pseudomonas sp. A34-9]
MPIDELFALYPLAFVFTALLLGLVVGSFLNVLVWRLPKMLERDWRQQARDVLGLTGETPLPTYNLMMPHSECPHCAHRIR
PWENIPLLSYLWLRGRCSACAAPISKRYPLTELICGLLSAFIAWHFGFGWPACVLIFLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFGVFVPLHDALWGAVAGYMALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AIIGVIFLRLREQKTSTPIPFGPYLAIAGWIALLWGGQITDFYWQSVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=801255 P3G59_RS24725 WP_277759334.1 5539394..5540266(+) (pilD) [Pseudomonas sp. A34-9]
ATGCCTATCGACGAACTGTTTGCCCTGTATCCGCTGGCCTTTGTCTTCACCGCCCTGCTGCTTGGTCTGGTGGTCGGCAG
TTTCCTTAACGTGCTGGTCTGGCGCCTGCCGAAAATGCTCGAACGCGACTGGCGTCAACAGGCCCGTGATGTGCTCGGTT
TGACCGGCGAGACGCCGCTGCCCACCTACAACCTGATGATGCCGCACTCCGAATGCCCGCATTGCGCCCACCGGATCCGT
CCGTGGGAAAACATTCCTCTGCTCAGTTATCTGTGGCTGCGTGGGCGTTGTTCAGCGTGCGCGGCGCCCATCAGCAAACG
CTATCCGTTGACCGAACTGATCTGTGGATTGCTCTCGGCCTTCATCGCCTGGCACTTCGGTTTCGGTTGGCCGGCGTGCG
TGCTGATCTTCCTCACCTGGGGTTTGCTGGCGATGAGCCTGATCGACACCGAACATCAACTGTTGCCCGATGTGCTGGTG
CTGCCGTTGCTGTGGCTGGGGTTGATCGTCAACAGCTTCGGCGTGTTCGTGCCGTTGCACGATGCACTGTGGGGCGCGGT
GGCCGGTTACATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAACTGCTGACCGGCAAGGACGGCATCGGCCATGGTGATT
TCAAGCTGTTGGCGCTGCTCGGCGCCTGGGGCGGCTGGCAGATTTTGCCGCTGACGATTCTGCTGTCATCATTGGTCGGC
GCCATTATCGGGGTGATTTTTCTGCGTTTGCGCGAGCAGAAAACCTCGACGCCGATCCCCTTCGGCCCCTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.577	97.931	0.534
pilD	Vibrio campbellii strain DS40M4	52.632	98.276	0.517
pilD	Acinetobacter baumannii D1279779	47.735	98.966	0.472
pilD	Acinetobacter nosocomialis M2	47.735	98.966	0.472
pilD	Neisseria gonorrhoeae MS11	45.645	98.966	0.452