Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RDJ20_RS00110 Genome accession   NZ_CP133755
Coordinates   23891..24979 (+) Length   362 a.a.
NCBI ID   WP_003123764.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain BJ86     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 18891..29979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDJ20_RS00090 (RDJ20_00090) rsmB 19785..21089 (-) 1305 WP_196745344.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  RDJ20_RS00095 (RDJ20_00095) fmt 21086..22030 (-) 945 WP_039027019.1 methionyl-tRNA formyltransferase -
  RDJ20_RS00100 (RDJ20_00100) def 22085..22591 (-) 507 WP_003097293.1 peptide deformylase -
  RDJ20_RS00105 (RDJ20_00105) tsaP 22730..23755 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  RDJ20_RS00110 (RDJ20_00110) dprA 23891..24979 (+) 1089 WP_003123764.1 DNA-processing protein DprA Machinery gene
  RDJ20_RS00115 (RDJ20_00115) - 25020..25577 (+) 558 WP_033968205.1 L-threonylcarbamoyladenylate synthase -
  RDJ20_RS00120 (RDJ20_00120) - 25587..26564 (-) 978 WP_033978596.1 NADPH:quinone reductase -
  RDJ20_RS00125 (RDJ20_00125) hemF 26755..27672 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  RDJ20_RS00130 (RDJ20_00130) aroE 27730..28554 (+) 825 WP_033978595.1 shikimate dehydrogenase -
  RDJ20_RS00135 (RDJ20_00135) - 28665..29651 (+) 987 WP_196745343.1 hypothetical protein -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 37673.17 Da        Isoelectric Point: 7.0742

>NTDB_id=800857 RDJ20_RS00110 WP_003123764.1 23891..24979(+) (dprA) [Pseudomonas aeruginosa strain BJ86]
MKNHSPAELEARLRLHGLPELGPMRFLRLIEAFGSASSALAAPAGAWRTLGVPAEAAAARRSPAVREAAGEALRWLEGPR
RHLLMWDDPGYPALLAEVADAPPLLYVEGAPETLERPQLAMVGSRRASPAGLGTARSFARSLAQGGFAITSGLALGIDGA
AHEGALEAGGATVAVLGTGLRRLYPRRHEALARRIVEGGGALVSELPLDSPPLPANFPRRNRIISGLSLGVLVVEASPAS
GSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGALLVESVGHVLEALRGWAQAEPAEAPAQPLPHPLLALLRAAP
YTSEGLAAASGMTLPDVLATLSELELDGRVACEAGTWVHRSG

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=800857 RDJ20_RS00110 WP_003123764.1 23891..24979(+) (dprA) [Pseudomonas aeruginosa strain BJ86]
ATGAAGAACCATTCTCCAGCCGAACTGGAAGCACGGCTGCGCCTGCATGGCCTGCCCGAACTGGGACCCATGCGCTTCCT
GCGCTTGATCGAGGCCTTCGGTTCGGCCTCTTCCGCGCTTGCCGCGCCAGCCGGCGCCTGGCGCACCCTGGGAGTGCCTG
CCGAGGCCGCCGCCGCGCGGCGCAGCCCGGCGGTGCGGGAGGCTGCGGGTGAAGCCCTGCGCTGGCTGGAAGGTCCGCGC
AGACACCTGCTGATGTGGGACGACCCGGGATACCCGGCACTGCTCGCCGAAGTCGCCGATGCCCCGCCGCTGCTGTACGT
CGAAGGCGCCCCGGAGACTCTGGAACGGCCGCAACTGGCGATGGTCGGCAGCCGCCGCGCCAGCCCCGCCGGGCTGGGCA
CCGCCCGGAGCTTTGCGCGCAGCCTGGCGCAGGGCGGCTTCGCCATCACCAGCGGGCTGGCCCTGGGCATCGATGGCGCC
GCCCACGAGGGCGCGCTGGAGGCGGGCGGCGCGACCGTGGCAGTCCTCGGCACCGGCCTGCGCAGGCTCTATCCGCGCCG
CCACGAGGCGCTGGCACGGCGCATCGTCGAGGGTGGCGGCGCGCTGGTCTCGGAACTGCCGCTGGACAGCCCGCCGCTGC
CGGCAAACTTTCCCCGGCGCAACCGCATCATCAGTGGACTCTCGCTGGGTGTGCTGGTGGTCGAGGCAAGTCCCGCCAGC
GGCTCGCTGATCACCGCGCGGCTGGCGGCGGAACAGGGTCGCGAGGTGTACGCCATTCCGGGTTCCATCCACCATCCCGG
CGCACGTGGCTGCCACCAACTGATTCGCGATGGCGCGCTGCTGGTGGAAAGCGTCGGGCACGTGCTCGAAGCACTGCGCG
GCTGGGCGCAGGCGGAGCCAGCGGAAGCGCCTGCGCAGCCCCTGCCCCACCCTTTGCTGGCGCTGCTGCGCGCCGCGCCC
TACACCAGCGAAGGCCTGGCCGCCGCCAGCGGCATGACGTTACCCGACGTGCTGGCGACGCTCAGCGAACTGGAACTCGA
CGGCCGGGTCGCCTGCGAGGCCGGCACCTGGGTGCATCGCTCCGGCTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(81-283)

DprA winged helix domain (WHD_DprA)

(297-355)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

43.514

100

0.445
  dprA Vibrio cholerae strain A1552

43.048

100

0.445
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

43.048

100

0.445
  dprA Legionella pneumophila strain ERS1305867

43.38

98.066

0.425
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.254

98.066

0.414
  dprA Acinetobacter baumannii D1279779

37.845

100

0.378
  dprA Neisseria gonorrhoeae strain FA1090

44.554

83.702

0.373
  dprA Acinetobacter baumannii strain A118

38.177

96.961

0.37
  dprA Neisseria meningitidis MC58

46.048

80.387

0.37
  dprA Neisseria meningitidis strain C311

46.048

80.387

0.37
  dprA Glaesserella parasuis strain SC1401

46.853

79.006

0.37
  dprA Neisseria gonorrhoeae MS11

44.224

83.702

0.37