Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | P3K46_RS05100 | Genome accession | NZ_CP119692 |
| Coordinates | 1089777..1090214 (+) | Length | 145 a.a. |
| NCBI ID | WP_316657872.1 | Uniprot ID | - |
| Organism | Staphylococcus pseudintermedius strain CUVET18-80 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1084777..1095214
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P3K46_RS05045 (P3K46_04995) | - | 1084939..1085382 (+) | 444 | WP_096543802.1 | hypothetical protein | - |
| P3K46_RS05050 (P3K46_05000) | - | 1085419..1085661 (+) | 243 | WP_096533154.1 | hypothetical protein | - |
| P3K46_RS05055 (P3K46_05005) | - | 1085618..1086118 (-) | 501 | WP_096533155.1 | hypothetical protein | - |
| P3K46_RS05060 (P3K46_05010) | - | 1086175..1086945 (+) | 771 | WP_096636707.1 | phage antirepressor | - |
| P3K46_RS05065 (P3K46_05015) | - | 1086983..1087216 (+) | 234 | WP_100008570.1 | DUF2829 domain-containing protein | - |
| P3K46_RS05070 (P3K46_05020) | - | 1087202..1087537 (-) | 336 | WP_100008571.1 | hypothetical protein | - |
| P3K46_RS05075 (P3K46_05025) | - | 1087604..1087831 (+) | 228 | WP_037542716.1 | DUF771 domain-containing protein | - |
| P3K46_RS05080 (P3K46_05030) | - | 1088105..1088365 (+) | 261 | WP_161193284.1 | DUF1108 family protein | - |
| P3K46_RS05085 (P3K46_05035) | - | 1088377..1088631 (+) | 255 | WP_063282618.1 | hypothetical protein | - |
| P3K46_RS05090 (P3K46_05040) | - | 1088624..1089109 (+) | 486 | WP_063282619.1 | siphovirus Gp157 family protein | - |
| P3K46_RS05095 (P3K46_05045) | - | 1089106..1089777 (+) | 672 | WP_031253729.1 | ERF family protein | - |
| P3K46_RS05100 (P3K46_05050) | ssbA | 1089777..1090214 (+) | 438 | WP_316657872.1 | single-stranded DNA-binding protein | Machinery gene |
| P3K46_RS05105 (P3K46_05055) | - | 1090398..1091069 (+) | 672 | WP_129950964.1 | putative HNHc nuclease | - |
| P3K46_RS05110 (P3K46_05060) | - | 1091085..1091567 (-) | 483 | WP_110179334.1 | hypothetical protein | - |
| P3K46_RS05115 (P3K46_05065) | - | 1091611..1092378 (+) | 768 | WP_110179335.1 | conserved phage C-terminal domain-containing protein | - |
| P3K46_RS05120 (P3K46_05070) | - | 1092381..1093157 (+) | 777 | WP_203163242.1 | ATP-binding protein | - |
| P3K46_RS05125 (P3K46_05075) | - | 1093151..1093330 (+) | 180 | WP_316657860.1 | hypothetical protein | - |
| P3K46_RS05130 (P3K46_05080) | - | 1093330..1093638 (+) | 309 | WP_063282628.1 | hypothetical protein | - |
| P3K46_RS05135 (P3K46_05085) | - | 1093799..1094251 (+) | 453 | WP_275341616.1 | DUF3310 domain-containing protein | - |
| P3K46_RS05140 (P3K46_05090) | - | 1094252..1094503 (+) | 252 | WP_015978017.1 | SAV1978 family virulence-associated passenger protein | - |
| P3K46_RS05145 (P3K46_05095) | - | 1094507..1094692 (+) | 186 | WP_316657853.1 | hypothetical protein | - |
| P3K46_RS05150 (P3K46_05100) | - | 1094689..1095039 (+) | 351 | WP_316657851.1 | YopX family protein | - |
Sequence
Protein
Download Length: 145 a.a. Molecular weight: 16446.05 Da Isoelectric Point: 4.9225
>NTDB_id=800452 P3K46_RS05100 WP_316657872.1 1089777..1090214(+) (ssbA) [Staphylococcus pseudintermedius strain CUVET18-80]
MINRVVLVGRLTKDPEFRTTQSGVEVATFTLAVNRNYKNKNGEQQADFINCIVFRKQAENVNNYLNKGNLAGVDGRLQSR
SYENQEGRRIFVTEVICDSVQFLESKNNNQSNNQSQQQRGQAPAQDNSFTNANNPIDIDDEDLPF
MINRVVLVGRLTKDPEFRTTQSGVEVATFTLAVNRNYKNKNGEQQADFINCIVFRKQAENVNNYLNKGNLAGVDGRLQSR
SYENQEGRRIFVTEVICDSVQFLESKNNNQSNNQSQQQRGQAPAQDNSFTNANNPIDIDDEDLPF
Nucleotide
Download Length: 438 bp
>NTDB_id=800452 P3K46_RS05100 WP_316657872.1 1089777..1090214(+) (ssbA) [Staphylococcus pseudintermedius strain CUVET18-80]
ATGATCAACAGAGTCGTATTGGTAGGTCGATTAACAAAAGACCCGGAATTCAGAACGACGCAATCAGGCGTGGAGGTAGC
AACATTTACATTGGCAGTTAACCGCAATTACAAAAATAAAAACGGAGAACAACAAGCAGACTTTATAAACTGTATTGTTT
TTCGTAAGCAAGCAGAAAATGTGAACAACTATCTAAATAAAGGAAATCTAGCTGGCGTTGATGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTATATTCGTTACAGAAGTGATTTGTGATAGCGTGCAATTTTTAGAGTCTAAAAA
TAACAATCAATCTAACAACCAATCACAACAACAAAGAGGTCAAGCGCCTGCACAAGATAATTCATTCACTAACGCAAATA
ATCCGATTGACATCGACGATGAAGATTTACCCTTTTGA
ATGATCAACAGAGTCGTATTGGTAGGTCGATTAACAAAAGACCCGGAATTCAGAACGACGCAATCAGGCGTGGAGGTAGC
AACATTTACATTGGCAGTTAACCGCAATTACAAAAATAAAAACGGAGAACAACAAGCAGACTTTATAAACTGTATTGTTT
TTCGTAAGCAAGCAGAAAATGTGAACAACTATCTAAATAAAGGAAATCTAGCTGGCGTTGATGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTATATTCGTTACAGAAGTGATTTGTGATAGCGTGCAATTTTTAGAGTCTAAAAA
TAACAATCAATCTAACAACCAATCACAACAACAAAGAGGTCAAGCGCCTGCACAAGATAATTCATTCACTAACGCAAATA
ATCCGATTGACATCGACGATGAAGATTTACCCTTTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.233 |
100 |
0.655 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.176 |
100 |
0.6 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
56.604 |
73.103 |
0.414 |
| ssbA | Streptococcus mutans UA159 |
38.621 |
100 |
0.386 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
37.931 |
100 |
0.379 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
37.931 |
100 |
0.379 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
37.931 |
100 |
0.379 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
37.241 |
100 |
0.372 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
37.241 |
100 |
0.372 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
37.241 |
100 |
0.372 |
| ssbB/cilA | Streptococcus mitis SK321 |
37.241 |
100 |
0.372 |