Detailed information NTG0799705

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: CupriaWKF_RS14730
• Genome accession: NZ_CP119572
• Coordinates: 3172331..3173596 (+)
• Length: 421 a.a.
• NCBI ID: WP_276098585.1
• Uniprot ID: -
• Organism: Cupriavidus sp. WKF15
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3167331..3178596

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CupriaWKF_RS14700 (CupriaWKF_14700)	rpmA	3168089..3168349 (-)	261	WP_092306246.1	50S ribosomal protein L27	-
CupriaWKF_RS14705 (CupriaWKF_14705)	rplU	3168389..3168700 (-)	312	WP_011299103.1	50S ribosomal protein L21	-
CupriaWKF_RS14710 (CupriaWKF_14710)	-	3168939..3169145 (-)	207	WP_276098583.1	hypothetical protein	-
CupriaWKF_RS14715 (CupriaWKF_14715)	ispB	3169195..3170124 (+)	930	WP_276100819.1	octaprenyl diphosphate synthase	-
CupriaWKF_RS14725 (CupriaWKF_14725)	pilB	3170569..3172299 (+)	1731	WP_276098584.1	type IV-A pilus assembly ATPase PilB	Machinery gene
CupriaWKF_RS14730 (CupriaWKF_14730)	pilC	3172331..3173596 (+)	1266	WP_276098585.1	type II secretion system F family protein	Machinery gene
CupriaWKF_RS14735 (CupriaWKF_14735)	pilD	3173600..3174484 (+)	885	WP_276098586.1	A24 family peptidase	Machinery gene
CupriaWKF_RS14740 (CupriaWKF_14740)	coaE	3174545..3175171 (+)	627	WP_276098587.1	dephospho-CoA kinase	-
CupriaWKF_RS14745 (CupriaWKF_14745)	zapD	3175384..3176142 (+)	759	WP_224082031.1	cell division protein ZapD	-
CupriaWKF_RS14750 (CupriaWKF_14750)	-	3176147..3176338 (+)	192	WP_011299110.1	DNA gyrase inhibitor YacG	-
CupriaWKF_RS14755 (CupriaWKF_14755)	-	3176379..3178415 (-)	2037	WP_276098588.1	oligopeptide transporter, OPT family	-

Sequence

Protein

• Length: 421 a.a.
• Molecular weight: 46177.26 Da
• Isoelectric Point: 10.1782

>NTDB_id=799705 CupriaWKF_RS14730 WP_276098585.1 3172331..3173596(+) (pilC) [Cupriavidus sp. WKF15]
MATRAPAAGARAAAPSRAKAGRKAPTQYIFEWEGKDRKGKTFTGEQRAENQAEVTAALRKQGLTVVKMKKRKAARGKKIT
EKDIAYFTRQLSTMLKAGIPLLQSIDIIARGHANPNFTQLLSDIRFDIESGSSMAQAFRRHPRYFDTLYCNLIDAGEQGG
ILDSLLERLSLYMEKTIALKSQIKSAMIYPIAVLTVAFAVTVILMLFVIPAFKGVFSSFGANLPAPTLVVIAISDFFVSY
WYIVIGIPVGGIALYLRALKKSEKVQRSTDRMLLKLPIFGSLFRKAVIARWTRTLATMFAAGTPLVESMESVAGAAGNWV
YYDATREIEQAVRIGTSLTNAMQATHVFDAMVLQMTQIGEESGALDNMLLKVAEFYEREVDDAVAAISSLIEPLIIVVLG
VLIGGMVVAMYLPIFKLGQVV

Nucleotide

• Length: 1266 bp

>NTDB_id=799705 CupriaWKF_RS14730 WP_276098585.1 3172331..3173596(+) (pilC) [Cupriavidus sp. WKF15]
ATGGCAACGCGCGCACCAGCAGCGGGCGCACGGGCGGCAGCGCCGTCACGCGCGAAAGCAGGACGCAAGGCACCTACGCA
GTACATCTTTGAGTGGGAAGGCAAGGACCGCAAGGGCAAGACGTTCACCGGGGAACAGCGGGCCGAGAACCAGGCCGAGG
TCACGGCGGCACTGCGCAAGCAGGGCCTCACCGTGGTCAAGATGAAAAAGCGCAAGGCGGCGCGCGGCAAGAAGATCACC
GAGAAGGACATCGCGTACTTCACCCGCCAGCTCTCGACCATGCTCAAGGCGGGCATCCCGCTGCTGCAGTCGATCGACAT
CATCGCGCGCGGCCATGCCAACCCGAACTTCACGCAGCTGCTGTCCGACATCCGCTTCGACATCGAGTCCGGCAGCAGCA
TGGCGCAGGCCTTCCGCCGCCACCCGCGCTATTTCGACACGCTGTACTGCAACCTGATCGACGCCGGCGAACAGGGCGGT
ATCCTCGATTCCCTGCTGGAGCGCCTGTCGCTCTACATGGAAAAGACCATCGCGCTGAAGAGCCAGATCAAGTCCGCGAT
GATCTACCCGATCGCGGTGCTGACCGTGGCCTTTGCCGTGACGGTGATCCTGATGCTGTTCGTGATCCCGGCCTTCAAGG
GCGTGTTCTCGAGCTTCGGCGCCAACCTGCCGGCGCCGACGCTGGTAGTGATCGCGATCTCGGACTTCTTTGTCTCGTAC
TGGTACATCGTCATCGGCATACCGGTGGGCGGCATCGCCCTCTATTTACGGGCCTTGAAGAAGTCGGAGAAGGTCCAGCG
CAGCACCGACCGCATGTTGCTGAAGCTGCCCATCTTCGGCAGCCTGTTCCGCAAGGCCGTGATCGCGCGCTGGACGCGTA
CGCTCGCCACCATGTTCGCCGCCGGCACGCCGCTGGTGGAATCGATGGAATCCGTGGCGGGTGCCGCCGGCAACTGGGTC
TACTACGACGCCACGCGCGAGATCGAACAGGCGGTGCGCATCGGCACCAGCCTGACCAACGCCATGCAGGCCACGCACGT
GTTCGATGCCATGGTGCTGCAGATGACCCAGATCGGCGAGGAATCGGGCGCGCTCGACAATATGCTGCTCAAGGTGGCCG
AGTTCTACGAGCGCGAGGTCGATGACGCCGTGGCGGCCATTTCGAGCCTGATCGAACCGCTGATCATCGTGGTGCTGGGC
GTGCTCATCGGCGGCATGGTGGTCGCGATGTACCTGCCGATCTTCAAGCTGGGACAGGTGGTGTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (291-413)

• Type II secretion system (T2SS), protein F (T2SSF) (87-210)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	50.372	95.724	0.482
pilG	Neisseria gonorrhoeae MS11	50.249	95.487	0.48
pilG	Neisseria meningitidis 44/76-A	50	95.487	0.477
pilC	Acinetobacter baumannii D1279779	48.403	96.675	0.468
pilC	Acinetobacter baylyi ADP1	47.42	96.675	0.458
pilC	Legionella pneumophila strain ERS1305867	47.772	95.962	0.458
pilC	Vibrio cholerae strain A1552	38.537	97.387	0.375
pilC	Vibrio campbellii strain DS40M4	38.213	95.724	0.366
pilC	Thermus thermophilus HB27	37.108	98.575	0.366