Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   RDV59_RS06485 Genome accession   NZ_CP133476
Coordinates   1309554..1310624 (+) Length   356 a.a.
NCBI ID   WP_038676019.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LMG 11489     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1304554..1315624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV59_RS06470 (RDV59_06470) glgP 1304675..1306936 (+) 2262 WP_060775862.1 glycogen/starch/alpha-glucan family phosphorylase -
  RDV59_RS06475 (RDV59_06475) - 1307046..1308173 (-) 1128 WP_223896428.1 hypothetical protein -
  RDV59_RS06480 (RDV59_06480) - 1308297..1309286 (+) 990 WP_038676017.1 lipoate--protein ligase -
  RDV59_RS06485 (RDV59_06485) xerS 1309554..1310624 (+) 1071 WP_038676019.1 tyrosine recombinase XerS Machinery gene
  RDV59_RS06490 (RDV59_06490) - 1310788..1313328 (-) 2541 WP_038676020.1 M1 family metallopeptidase -
  RDV59_RS06495 (RDV59_06495) phoU 1313462..1314115 (-) 654 WP_021146873.1 phosphate signaling complex protein PhoU -
  RDV59_RS06500 (RDV59_06500) pstB 1314144..1314902 (-) 759 WP_002890956.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41401.46 Da        Isoelectric Point: 9.3734

>NTDB_id=799705 RDV59_RS06485 WP_038676019.1 1309554..1310624(+) (xerS) [Streptococcus salivarius strain LMG 11489]
MKRELLLEKIEEYKSLMPWFVLEYYQSKLSVPYSFTTLYEYLKEYKRFFDWLIDSGISDADDIASIDIKTLENLTKKDME
SFVLYLRERPSLNTYSKKQGVSQTTINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETMEFLDYVENEYEVKLSNRAKSSFYKNKERDLAIIALLLASGVRLSEAVNLDLKDINLKMMVIDVTRKGGKRDS
VNVASFAKSYLETYLSIRDKRYKAEKQDLALFLTEYRGVPNRIDASSIEKMVAKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=799705 RDV59_RS06485 WP_038676019.1 1309554..1310624(+) (xerS) [Streptococcus salivarius strain LMG 11489]
ATGAAACGTGAACTCTTACTCGAAAAAATTGAGGAATACAAATCTCTAATGCCCTGGTTTGTTCTGGAGTATTATCAATC
TAAACTATCGGTACCGTATTCTTTTACAACCTTATACGAATACCTTAAGGAATATAAACGCTTTTTTGATTGGTTGATTG
ACTCAGGTATTTCAGATGCTGATGATATTGCCTCAATTGACATCAAAACCTTGGAAAATCTAACTAAAAAAGATATGGAG
TCATTTGTCCTTTATCTACGTGAACGTCCATCTTTGAATACCTATTCCAAGAAACAGGGTGTCTCTCAAACGACTATTAA
TCGTACACTTTCAGCCCTATCTAGTCTCTATAAGTATTTAACCGAGGAGGTCGAGGGTCCTGACGGTGAGCCTTATTTCT
ATCGTAACGTCATGAAAAAAGTTTCTACTAAGAAAAAGAAAGAAACTCTAGCTGCACGTGCTGAGAATATCAAACAAAAA
CTCTTTCTTGGCGATGAAACCATGGAATTCCTTGATTATGTAGAAAATGAATACGAAGTCAAGCTCTCAAATCGCGCCAA
ATCTTCGTTTTATAAGAATAAAGAACGTGATTTGGCTATCATTGCCTTGCTACTGGCTTCAGGTGTTCGACTCTCTGAAG
CTGTTAATCTGGACCTTAAAGATATCAATCTAAAAATGATGGTCATCGACGTCACTCGAAAAGGTGGCAAACGGGACTCA
GTTAATGTAGCAAGTTTTGCAAAGTCCTATCTTGAAACTTATCTCAGTATACGTGATAAACGCTATAAGGCTGAAAAGCA
AGACCTTGCCCTCTTTTTAACGGAATATCGAGGGGTTCCAAACCGTATTGATGCTTCAAGTATCGAAAAGATGGTTGCCA
AATATTCTCAGGATTTCAAAATTCGTGTGACTCCCCACAAGCTTCGACATACTCTGGCAACACGCCTTTATGATGCTACC
AAGTCTCAAGTTTTAGTGAGTCACCAACTTGGCCATGCTTCCACTCAGGTTACCGATCTATATACGCATATTGTTAATGA
TGAACAAAAAAATGCTCTAGACAATTTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(183-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.146

100

0.831