Detailed information NTG0799706

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CupriaWKF_RS14735
• Genome accession: NZ_CP119572
• Coordinates: 3173600..3174484 (+)
• Length: 294 a.a.
• NCBI ID: WP_276098586.1
• Uniprot ID: -
• Organism: Cupriavidus sp. WKF15
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3168600..3179484

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CupriaWKF_RS14710 (CupriaWKF_14710)	-	3168939..3169145 (-)	207	WP_276098583.1	hypothetical protein	-
CupriaWKF_RS14715 (CupriaWKF_14715)	ispB	3169195..3170124 (+)	930	WP_276100819.1	octaprenyl diphosphate synthase	-
CupriaWKF_RS14725 (CupriaWKF_14725)	pilB	3170569..3172299 (+)	1731	WP_276098584.1	type IV-A pilus assembly ATPase PilB	Machinery gene
CupriaWKF_RS14730 (CupriaWKF_14730)	pilC	3172331..3173596 (+)	1266	WP_276098585.1	type II secretion system F family protein	Machinery gene
CupriaWKF_RS14735 (CupriaWKF_14735)	pilD	3173600..3174484 (+)	885	WP_276098586.1	A24 family peptidase	Machinery gene
CupriaWKF_RS14740 (CupriaWKF_14740)	coaE	3174545..3175171 (+)	627	WP_276098587.1	dephospho-CoA kinase	-
CupriaWKF_RS14745 (CupriaWKF_14745)	zapD	3175384..3176142 (+)	759	WP_224082031.1	cell division protein ZapD	-
CupriaWKF_RS14750 (CupriaWKF_14750)	-	3176147..3176338 (+)	192	WP_011299110.1	DNA gyrase inhibitor YacG	-
CupriaWKF_RS14755 (CupriaWKF_14755)	-	3176379..3178415 (-)	2037	WP_276098588.1	oligopeptide transporter, OPT family	-
CupriaWKF_RS14760 (CupriaWKF_14760)	-	3178496..3178924 (-)	429	WP_276098589.1	NUDIX domain-containing protein	-

Sequence

Protein

• Length: 294 a.a.
• Molecular weight: 31441.47 Da
• Isoelectric Point: 7.6616

>NTDB_id=799706 CupriaWKF_RS14735 WP_276098586.1 3173600..3174484(+) (pilD) [Cupriavidus sp. WKF15]
MNPVFPAGGASTLPALAALPPSFLLAAAAVLGLLVGSFLNVVIHRLPRMMEYDEANYIAELRGDPLPYPERYNLMVPRSA
CPHCGHAIAAWENIPVISYLFLRGRCSSCKAPIGMRYPLVELACGVLSALAAWHFGPTWQGVAALMLLWSLLALTMIDAD
TQLLPDQITLPLVWLGLLLNLGGLFVPLADAVIGAAAGYLLLWSAYWAFKLVRGKEGMGYGDFKLMAALGAWFGWQALPT
LVLLSSVVGVVFGVASIALRRQGRDTPFPFGPFIAGAGVLVLFFGPAVLPLPMP

Nucleotide

• Length: 885 bp

>NTDB_id=799706 CupriaWKF_RS14735 WP_276098586.1 3173600..3174484(+) (pilD) [Cupriavidus sp. WKF15]
ATGAATCCGGTATTTCCCGCCGGCGGCGCCTCCACGCTGCCGGCGCTGGCGGCGCTGCCGCCGTCGTTCCTGCTGGCGGC
AGCGGCCGTCCTCGGCCTGCTGGTGGGCAGCTTCCTGAACGTGGTGATCCACCGGTTGCCGCGCATGATGGAGTATGACG
AGGCCAACTACATCGCCGAACTGCGCGGCGATCCCCTGCCCTACCCGGAACGCTACAACCTGATGGTGCCGCGCTCGGCC
TGCCCGCACTGTGGACATGCCATCGCCGCCTGGGAGAACATTCCGGTCATCAGCTACCTCTTCCTGCGCGGGCGCTGCTC
GTCGTGCAAAGCGCCTATCGGCATGCGGTACCCGCTGGTGGAGCTGGCTTGCGGCGTGCTGAGCGCGCTGGCTGCCTGGC
ACTTCGGACCGACCTGGCAGGGCGTGGCCGCGCTGATGCTGCTGTGGTCGCTGCTGGCGCTGACGATGATCGATGCCGAT
ACGCAGCTCCTGCCCGACCAGATCACGCTGCCGTTGGTGTGGCTGGGGCTGCTGCTCAACCTGGGCGGGCTGTTCGTGCC
GCTGGCCGATGCGGTGATCGGCGCCGCGGCCGGCTACCTGCTGCTGTGGTCCGCCTACTGGGCGTTCAAGCTGGTGCGCG
GCAAGGAAGGCATGGGCTATGGCGACTTCAAGCTGATGGCCGCGCTGGGCGCCTGGTTCGGCTGGCAGGCGCTGCCGACG
CTGGTGCTGCTGTCTTCGGTGGTCGGCGTGGTCTTTGGCGTGGCCAGCATCGCGCTGCGCCGCCAGGGCCGCGACACGCC
CTTCCCGTTCGGCCCCTTCATTGCCGGCGCCGGCGTGCTGGTGCTGTTCTTCGGCCCCGCCGTGCTGCCGCTGCCGATGC
CGTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (30-135)

• Type IV leader peptidase family (Peptidase_A24) (146-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.094	90.136	0.497
pilD	Vibrio campbellii strain DS40M4	53.309	92.517	0.493
pilD	Neisseria gonorrhoeae MS11	51.254	94.898	0.486
pilD	Acinetobacter baumannii D1279779	47.037	91.837	0.432
pilD	Acinetobacter nosocomialis M2	46.667	91.837	0.429