Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   RDV59_RS06060 Genome accession   NZ_CP133476
Coordinates   1207590..1208072 (+) Length   160 a.a.
NCBI ID   WP_037597740.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LMG 11489     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1202590..1213072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV59_RS06040 (RDV59_06040) queG 1203464..1204582 (+) 1119 WP_038675902.1 tRNA epoxyqueuosine(34) reductase QueG -
  RDV59_RS06045 (RDV59_06045) prfB 1204635..1205733 (+) 1099 WP_096833329.1 peptide chain release factor 2 -
  RDV59_RS06050 (RDV59_06050) ftsE 1205821..1206513 (+) 693 WP_002885005.1 cell division ATP-binding protein FtsE -
  RDV59_RS06055 (RDV59_06055) ftsX 1206506..1207435 (+) 930 WP_003092823.1 permease-like cell division protein FtsX -
  RDV59_RS06060 (RDV59_06060) mutX 1207590..1208072 (+) 483 WP_037597740.1 8-oxo-dGTP diphosphatase Machinery gene
  RDV59_RS06065 (RDV59_06065) - 1208082..1209260 (+) 1179 WP_038675906.1 AI-2E family transporter -
  RDV59_RS06070 (RDV59_06070) - 1209250..1210479 (+) 1230 WP_038675907.1 tetratricopeptide repeat protein -
  RDV59_RS06075 (RDV59_06075) lepB 1210601..1211158 (+) 558 WP_037597744.1 signal peptidase I -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18809.11 Da        Isoelectric Point: 4.4433

>NTDB_id=799704 RDV59_RS06060 WP_037597740.1 1207590..1208072(+) (mutX) [Streptococcus salivarius strain LMG 11489]
MTKLATICYIDNGKELLLLHRNKKPNDVHEGKWISVGGKLEAGETPDECARREILEETHFTVTEMDFKGMITFPEFTPGH
DWYTYVFKVTGFEGELISDEESREGTLEWVPYDEVLSKPTWEGDYEIFKWILEDRPFFSAKFSYDRNQNLVDKTVTFYDK

Nucleotide


Download         Length: 483 bp        

>NTDB_id=799704 RDV59_RS06060 WP_037597740.1 1207590..1208072(+) (mutX) [Streptococcus salivarius strain LMG 11489]
ATGACAAAGTTAGCTACCATTTGTTATATTGACAATGGAAAGGAGCTTTTGCTCCTACATCGTAATAAAAAGCCTAATGA
TGTTCATGAAGGAAAGTGGATTTCTGTCGGGGGAAAACTAGAAGCTGGAGAGACACCAGATGAATGTGCTCGTCGTGAAA
TTCTCGAGGAAACACATTTTACAGTGACTGAGATGGATTTTAAAGGTATGATTACCTTTCCAGAATTTACCCCTGGTCAT
GATTGGTACACCTATGTCTTTAAGGTAACTGGCTTTGAAGGAGAACTCATCTCAGATGAGGAGTCTCGTGAAGGAACGCT
TGAATGGGTACCATATGATGAGGTCTTATCTAAACCAACTTGGGAAGGTGACTATGAGATTTTTAAGTGGATCCTTGAAG
ATAGACCATTCTTCTCTGCAAAATTTAGCTACGATCGTAACCAGAACTTGGTAGATAAAACTGTAACATTTTATGATAAA
TAG

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(3-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

71.698

99.375

0.712