Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   PY372_RS14145 Genome accession   NZ_CP119301
Coordinates   3014202..3015950 (-) Length   582 a.a.
NCBI ID   WP_025623689.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain LC     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3009202..3020950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY372_RS14125 (PY372_14295) - 3009884..3010723 (-) 840 WP_005486862.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  PY372_RS14130 (PY372_14300) - 3010793..3012310 (-) 1518 WP_062852346.1 SPOR domain-containing protein -
  PY372_RS14135 (PY372_14305) aroB 3012363..3013463 (-) 1101 WP_323709927.1 3-dehydroquinate synthase -
  PY372_RS14140 (PY372_14310) aroK 3013495..3014013 (-) 519 WP_005381319.1 shikimate kinase AroK -
  PY372_RS14145 (PY372_14315) pilQ 3014202..3015950 (-) 1749 WP_025623689.1 type IV pilus secretin PilQ Machinery gene
  PY372_RS14150 (PY372_14320) pilP 3015982..3016497 (-) 516 WP_005480477.1 pilus assembly protein PilP Machinery gene
  PY372_RS14155 (PY372_14325) pilO 3016487..3017080 (-) 594 WP_005480482.1 type 4a pilus biogenesis protein PilO Machinery gene
  PY372_RS14160 (PY372_14330) pilN 3017073..3017651 (-) 579 WP_015297396.1 PilN domain-containing protein Machinery gene
  PY372_RS14165 (PY372_14335) pilM 3017635..3018651 (-) 1017 WP_005480475.1 type IV pilus biogenesis protein PilM Machinery gene

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 63755.88 Da        Isoelectric Point: 4.4619

>NTDB_id=798406 PY372_RS14145 WP_025623689.1 3014202..3015950(-) (pilQ) [Vibrio parahaemolyticus strain LC]
MKMRQGLTRTPRMLTGLFSLWLFLLLAPLAAAEDVQSNALKSIDFRTNKSKDAVIVVELASPAAIVDVKRVQEGLSIDLM
NTSVKDEQLYLLDVKDFATVVESVEVFRDTSTTRLVAYIDEEYTHDYRLTGRYLEITVSKLKPNEKVPDKSILEKEGKLI
SINFQDIPVRNVLQLIADYNQFNLVVSDSVEGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPTDELDLREKQQ
LEKQKLTEEMGELSSEIIKVNFAKASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIAVIREIIESLDIPVK
QVQIEARIVTISEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGLYEGGSDGEGEEGGDGVGIDDFLNVNLAATNKSA
ASIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATSVAFKKAVLSLKVTPQ
ITPDNRLVLDLSVTQDRPGKVVKTGTGEAMAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFR
RSYENVGKSELLIFVTPKVVIQ

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=798406 PY372_RS14145 WP_025623689.1 3014202..3015950(-) (pilQ) [Vibrio parahaemolyticus strain LC]
ATGAAAATGAGACAAGGATTAACACGTACACCAAGGATGCTTACTGGGCTCTTCTCCTTATGGTTGTTTTTACTTCTGGC
CCCTTTAGCAGCAGCAGAAGATGTACAGTCTAATGCGCTCAAGAGCATCGACTTTCGCACTAACAAAAGCAAAGATGCCG
TGATTGTGGTGGAGCTTGCATCCCCGGCGGCTATTGTTGATGTTAAACGTGTTCAAGAAGGATTAAGCATTGATTTAATG
AACACGTCGGTAAAAGATGAACAGCTTTACCTTCTCGACGTGAAAGATTTCGCGACGGTGGTGGAAAGTGTGGAAGTGTT
CCGCGATACCTCCACCACACGATTAGTTGCGTATATCGATGAAGAATACACGCATGACTATCGTTTGACGGGGCGTTATC
TTGAAATCACTGTCAGCAAGCTTAAACCAAATGAAAAAGTGCCAGACAAGAGCATCTTAGAAAAAGAAGGCAAGCTGATC
TCGATTAACTTCCAAGACATTCCTGTGCGTAACGTTTTGCAGCTGATTGCAGATTACAACCAGTTTAACTTGGTGGTTTC
GGATTCAGTCGAAGGCAACCTTACACTGCGTCTTGATGGTGTGCCGTGGCAACAAGTGCTCGACATCATCTTGCAAGTGA
AAGGGTTAGATAAGCGTGTTGATGGCAACGTGATTTTGGTCGCTCCAACCGATGAGCTGGATTTGCGCGAGAAGCAGCAG
TTAGAAAAACAAAAACTGACGGAAGAAATGGGTGAGCTTTCATCAGAAATCATCAAAGTCAATTTTGCTAAAGCTTCGGA
TATTGCAGAGATGATCAATGGTGAAGGCAACATTAGCATGTTGTCAGAGCGTGGCAGTATGACCATTGATGAGCGAACCA
ATTCGCTATTAATCAGAGAATTGCCAGAGAACATCGCCGTTATTCGCGAAATCATTGAATCGCTCGATATCCCAGTCAAA
CAAGTACAAATTGAAGCCCGAATTGTGACCATCAGTGAAGGTAACATGGACGAGTTAGGTATTCGTTGGGGCTTCACATC
TATTAATGGTAATAACACCGTTGGTGGCTCTATTGAGAACAACCTTGCGACAATCGGCTTGTACGAAGGTGGTAGTGACG
GCGAAGGTGAAGAGGGTGGTGATGGTGTTGGTATCGATGATTTCCTTAATGTGAACTTAGCTGCAACTAATAAAAGTGCT
GCAAGCATTGCGTTCCAGGTGGCAAAGTTAGGTTCTGATACATTATTGGACTTAGAGCTGTCTGCATTACAGCAAGAATC
AAAAGCAGAAATTATTTCGAGCCCACGATTGATCACGACCAATAAGAAGCCTGCGTACATTGAACAAGGTACTGAAATTC
CTTATCTAGAATCTTCATCGAGTGGTGCAACGTCAGTGGCCTTTAAAAAAGCGGTGTTGAGCTTGAAGGTGACACCGCAG
ATCACACCTGACAATCGTTTAGTGTTGGATCTGAGTGTGACCCAAGACCGACCTGGTAAGGTAGTGAAAACGGGCACAGG
AGAGGCAATGGCAATTGATACGCAGCGCATTGGCACCCAAGTTCTGGTTAATAATGGTGAGACGGTTGTGCTCGGTGGTA
TTTTCCAGCACAGTATTACTAACTCAGTGGATAAAGTGCCATTGTTGGGCGATCTTCCGCTATTAGGCGCACTTTTCCGC
CGAAGTTACGAAAACGTTGGTAAAAGTGAGTTGCTAATTTTCGTTACGCCTAAGGTCGTTATTCAGTAG

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(256-321)

Bacterial type II and III secretion system protein (Secretin)

(422-580)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

91.237

100

0.912
  pilQ Vibrio cholerae strain A1552

76.408

97.595

0.746
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

76.408

97.595

0.746
  pilQ Pseudomonas aeruginosa PAK

38.71

100

0.392
  pilQ Legionella pneumophila strain ERS1305867

41.273

94.502

0.39
  pilQ Legionella pneumophila strain Lp02

41.273

94.502

0.39
  pilQ Acinetobacter baumannii D1279779

37.625

100

0.387
  pilQ Acinetobacter baumannii strain A118

37.625

100

0.387
  comQ Acinetobacter baylyi ADP1

38.25

100

0.383