Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   PY372_RS14160 Genome accession   NZ_CP119301
Coordinates   3017073..3017651 (-) Length   192 a.a.
NCBI ID   WP_015297396.1    Uniprot ID   A0A243VIJ8
Organism   Vibrio parahaemolyticus strain LC     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3012073..3022651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY372_RS14135 (PY372_14305) aroB 3012363..3013463 (-) 1101 WP_323709927.1 3-dehydroquinate synthase -
  PY372_RS14140 (PY372_14310) aroK 3013495..3014013 (-) 519 WP_005381319.1 shikimate kinase AroK -
  PY372_RS14145 (PY372_14315) pilQ 3014202..3015950 (-) 1749 WP_025623689.1 type IV pilus secretin PilQ Machinery gene
  PY372_RS14150 (PY372_14320) pilP 3015982..3016497 (-) 516 WP_005480477.1 pilus assembly protein PilP Machinery gene
  PY372_RS14155 (PY372_14325) pilO 3016487..3017080 (-) 594 WP_005480482.1 type 4a pilus biogenesis protein PilO Machinery gene
  PY372_RS14160 (PY372_14330) pilN 3017073..3017651 (-) 579 WP_015297396.1 PilN domain-containing protein Machinery gene
  PY372_RS14165 (PY372_14335) pilM 3017635..3018651 (-) 1017 WP_005480475.1 type IV pilus biogenesis protein PilM Machinery gene
  PY372_RS14170 (PY372_14340) - 3018794..3021364 (+) 2571 WP_005496567.1 penicillin-binding protein 1A -
  PY372_RS14175 (PY372_14345) oxyR 3021420..3022328 (-) 909 WP_005465160.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22438.95 Da        Isoelectric Point: 6.9944

>NTDB_id=798409 PY372_RS14160 WP_015297396.1 3017073..3017651(-) (pilN) [Vibrio parahaemolyticus strain LC]
MLYRINLLPWRENQREEHRRRFVGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEKKEGKQHG

Nucleotide


Download         Length: 579 bp        

>NTDB_id=798409 PY372_RS14160 WP_015297396.1 3017073..3017651(-) (pilN) [Vibrio parahaemolyticus strain LC]
GTGCTTTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTAGTGGT
ATTGGGCGTCATGGTGGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTATCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCCGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCTCGGCTAGCAACCATGCTCGATAACATGGAGCGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTCGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTTATGTTCAACACGGTAGAAGAGAAGAAAGA
GGGAAAACAACATGGTTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A243VIJ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

83.333

100

0.833
  pilN Vibrio cholerae strain A1552

62.983

94.271

0.594