Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PY824_RS00935 Genome accession   NZ_CP119172
Coordinates   134505..134900 (+) Length   131 a.a.
NCBI ID   WP_039670357.1    Uniprot ID   -
Organism   Streptococcus macedonicus strain SGM CIP105683     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 129505..139900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY824_RS00910 (PY824_00910) proC 130822..131592 (-) 771 WP_014293782.1 pyrroline-5-carboxylate reductase -
  PY824_RS00915 (PY824_00915) pepA 131625..132719 (-) 1095 WP_039670356.1 glutamyl aminopeptidase -
  PY824_RS00920 (PY824_00920) - 132837..133130 (+) 294 WP_039670370.1 DUF4651 domain-containing protein -
  PY824_RS00925 (PY824_00925) - 133123..133440 (+) 318 WP_009853246.1 thioredoxin family protein -
  PY824_RS00930 (PY824_00930) ytpR 133449..134075 (+) 627 WP_014293785.1 YtpR family tRNA-binding protein -
  PY824_RS00935 (PY824_00935) ssbA 134505..134900 (+) 396 WP_039670357.1 single-stranded DNA-binding protein Machinery gene
  PY824_RS00940 (PY824_00940) - 135050..136093 (+) 1044 WP_039670358.1 YeeE/YedE family protein -
  PY824_RS00945 (PY824_00945) - 136096..136323 (+) 228 WP_014293788.1 sulfurtransferase TusA family protein -
  PY824_RS00950 (PY824_00950) - 136451..137257 (+) 807 WP_039670359.1 Cof-type HAD-IIB family hydrolase -
  PY824_RS00955 (PY824_00955) - 137417..138232 (+) 816 Protein_140 substrate-binding domain-containing protein -
  PY824_RS00960 (PY824_00960) - 138303..138398 (+) 96 Protein_141 IS6 family transposase -
  PY824_RS00965 (PY824_00965) - 138499..139797 (-) 1299 WP_039670360.1 polysaccharide deacetylase family protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14891.85 Da        Isoelectric Point: 5.2829

>NTDB_id=798028 PY824_RS00935 WP_039670357.1 134505..134900(+) (ssbA) [Streptococcus macedonicus strain SGM CIP105683]
MYNKVIMIGRLTAQPELVTTSNEKSVTRVALAVNRRFKSQNGEREADFISVVVWGRLAETLVSYAGKGSLISIDGELRTR
KYEKDGHTNYVTEVLCHSFQLLESRAQRDMRENNVANDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=798028 PY824_RS00935 WP_039670357.1 134505..134900(+) (ssbA) [Streptococcus macedonicus strain SGM CIP105683]
ATGTACAATAAAGTTATTATGATTGGTCGTTTGACAGCGCAGCCTGAGCTTGTGACGACTTCAAATGAGAAATCTGTTAC
ACGTGTAGCACTAGCAGTCAACCGCCGTTTTAAATCGCAAAATGGTGAGCGTGAGGCTGATTTTATTTCAGTTGTGGTTT
GGGGACGTTTGGCAGAAACTCTTGTTTCTTATGCTGGAAAAGGAAGTCTGATTTCGATTGATGGCGAGCTTCGCACACGT
AAATATGAAAAAGATGGTCACACGAATTATGTGACAGAAGTGCTTTGCCATTCTTTCCAACTTTTAGAAAGCCGTGCCCA
ACGTGACATGCGAGAAAATAATGTGGCAAATGACCTCGCTGATTTAGTTTTGGAAGAGGAAGAATTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

79.389

100

0.794
  ssbB/cilA Streptococcus pneumoniae R6

76.336

100

0.763
  ssbB/cilA Streptococcus pneumoniae Rx1

76.336

100

0.763
  ssbB/cilA Streptococcus pneumoniae D39

76.336

100

0.763
  ssbB/cilA Streptococcus pneumoniae TIGR4

75.573

100

0.756
  ssbB Streptococcus sobrinus strain NIDR 6715-7

75.573

100

0.756
  ssbB/cilA Streptococcus mitis NCTC 12261

74.809

100

0.748
  ssbB/cilA Streptococcus mitis SK321

74.809

100

0.748
  ssbB Lactococcus lactis subsp. cremoris KW2

60.526

87.023

0.527
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405
  ssb Latilactobacillus sakei subsp. sakei 23K

45.299

89.313

0.405