Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PX653_RS15620 Genome accession   NZ_CP119083
Coordinates   3554200..3555426 (+) Length   408 a.a.
NCBI ID   WP_277413693.1    Uniprot ID   -
Organism   Pseudoduganella chitinolytica strain ACM 3522     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3549200..3560426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PX653_RS15605 (PX653_15605) - 3549527..3550753 (-) 1227 WP_277413690.1 glutamate carboxypeptidase -
  PX653_RS15610 (PX653_15610) - 3551087..3552358 (+) 1272 WP_277413691.1 HlyC/CorC family transporter -
  PX653_RS15615 (PX653_15615) pilF 3552501..3554189 (+) 1689 WP_277413692.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PX653_RS15620 (PX653_15620) pilC 3554200..3555426 (+) 1227 WP_277413693.1 type II secretion system F family protein Machinery gene
  PX653_RS15625 (PX653_15625) pilD 3555571..3556449 (+) 879 WP_277413694.1 A24 family peptidase Machinery gene
  PX653_RS15630 (PX653_15630) coaE 3556446..3557068 (+) 623 Protein_3087 dephospho-CoA kinase -
  PX653_RS15635 (PX653_15635) zapD 3557270..3558025 (+) 756 WP_277413695.1 cell division protein ZapD -
  PX653_RS15640 (PX653_15640) yacG 3558038..3558217 (+) 180 WP_277413696.1 DNA gyrase inhibitor YacG -
  PX653_RS15645 (PX653_15645) - 3558233..3559387 (+) 1155 WP_277413697.1 FAD-dependent monooxygenase -
  PX653_RS15650 (PX653_15650) - 3559437..3559835 (-) 399 WP_277413698.1 NUDIX domain-containing protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44445.34 Da        Isoelectric Point: 9.7384

>NTDB_id=797587 PX653_RS15620 WP_277413693.1 3554200..3555426(+) (pilC) [Pseudoduganella chitinolytica strain ACM 3522]
MAREMARGGNQVKESVFAWEGKDKTGKTVRGELRAGGEAVVNVTLRRQGIMVTKVKKKVYRSGRKVTDKDITLFTRQLAT
MMKAGVPLLQAFDIVGKGHANPSVSKLIMDLRADIETGTSLNQAFRKFPLYFDPLFCNLVGAGEQAGILEDLLTRLAIYK
EKTLAMKAKIKSALTYPVAILAVAFIVTAVIMIWVVPAFKEVFTSFGADLPAPTLFVMAMSEFFVSYWYAIFGGLSAAIY
FFFQSWKRSLAMQQAMDRLLLRVPVFGDVIRKATVARWTRTLSTMFAAGVPLVEALDSVGGAAGNAVYLDATFRIQKEVS
TGTSLTVAMQNAEVFPNMVTQMVSIGEESGALDAMLGKVADFYEDEVDEAVASLSSLMEPAIMVILGVLIGGLVVAMYLP
IFKLGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=797587 PX653_RS15620 WP_277413693.1 3554200..3555426(+) (pilC) [Pseudoduganella chitinolytica strain ACM 3522]
ATGGCACGAGAGATGGCACGCGGCGGCAACCAGGTGAAGGAATCCGTCTTCGCATGGGAAGGCAAGGACAAGACAGGCAA
GACGGTGCGGGGCGAGCTGCGCGCCGGCGGCGAGGCCGTCGTCAACGTCACCCTGCGGCGCCAGGGCATCATGGTCACGA
AGGTGAAGAAGAAGGTGTACCGGTCCGGCCGCAAGGTGACGGACAAGGACATCACCCTCTTCACCCGCCAGCTGGCGACG
ATGATGAAGGCCGGCGTGCCGCTGCTGCAGGCGTTCGACATCGTCGGCAAGGGCCACGCCAACCCGTCCGTGTCGAAGCT
GATCATGGACCTGCGCGCCGATATCGAGACGGGCACGAGCCTGAACCAGGCCTTCCGCAAGTTCCCGCTGTATTTCGATC
CGCTGTTCTGCAACCTGGTGGGCGCCGGCGAACAGGCCGGCATCCTGGAAGACCTGCTGACGCGCCTGGCGATCTACAAG
GAAAAGACGCTGGCCATGAAGGCCAAGATCAAGTCGGCGCTGACGTATCCGGTGGCGATCCTGGCGGTGGCGTTCATCGT
CACGGCCGTCATCATGATCTGGGTGGTGCCCGCGTTCAAGGAAGTCTTCACCAGCTTCGGCGCCGACCTCCCCGCCCCCA
CGCTGTTCGTGATGGCGATGTCGGAATTCTTCGTCAGCTACTGGTATGCGATCTTCGGTGGGCTGTCTGCGGCGATCTAC
TTCTTCTTCCAGTCCTGGAAACGCTCGCTGGCGATGCAGCAGGCGATGGACCGGCTGCTGCTGCGCGTGCCCGTGTTCGG
CGACGTGATCCGCAAGGCCACCGTGGCGCGCTGGACCCGCACGCTGTCGACGATGTTCGCGGCCGGCGTGCCGCTGGTGG
AAGCGCTCGATTCGGTCGGCGGCGCGGCCGGCAACGCCGTCTACCTGGACGCCACCTTCAGGATCCAGAAGGAAGTCTCG
ACGGGCACCAGCCTGACGGTGGCCATGCAGAACGCCGAGGTGTTCCCGAACATGGTGACGCAGATGGTGTCGATCGGCGA
GGAGTCCGGTGCGCTGGACGCCATGCTGGGCAAGGTCGCCGACTTCTACGAGGACGAAGTGGACGAGGCGGTCGCGTCGC
TGTCCTCCTTGATGGAGCCGGCCATCATGGTCATCCTGGGCGTCCTGATCGGCGGCCTGGTGGTGGCGATGTACCTGCCG
ATCTTCAAGCTGGGCTCTGTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.5

98.039

0.544
  pilC Legionella pneumophila strain ERS1305867

54.798

97.059

0.532
  pilG Neisseria gonorrhoeae MS11

54.156

97.304

0.527
  pilG Neisseria meningitidis 44/76-A

53.904

97.304

0.525
  pilC Acinetobacter baylyi ADP1

52.01

97.549

0.507
  pilC Acinetobacter baumannii D1279779

51.385

97.304

0.5
  pilC Vibrio campbellii strain DS40M4

40.695

98.775

0.402
  pilC Vibrio cholerae strain A1552

40.404

97.059

0.392
  pilC Thermus thermophilus HB27

38.095

97.794

0.373