Detailed information NTG0797588

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PX653_RS15625
• Genome accession: NZ_CP119083
• Coordinates: 3555571..3556449 (+)
• Length: 292 a.a.
• NCBI ID: WP_277413694.1
• Uniprot ID: -
• Organism: Pseudoduganella chitinolytica strain ACM 3522
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3550571..3561449

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PX653_RS15610 (PX653_15610)	-	3551087..3552358 (+)	1272	WP_277413691.1	HlyC/CorC family transporter	-
PX653_RS15615 (PX653_15615)	pilF	3552501..3554189 (+)	1689	WP_277413692.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PX653_RS15620 (PX653_15620)	pilC	3554200..3555426 (+)	1227	WP_277413693.1	type II secretion system F family protein	Machinery gene
PX653_RS15625 (PX653_15625)	pilD	3555571..3556449 (+)	879	WP_277413694.1	A24 family peptidase	Machinery gene
PX653_RS15630 (PX653_15630)	coaE	3556446..3557068 (+)	623	Protein_3087	dephospho-CoA kinase	-
PX653_RS15635 (PX653_15635)	zapD	3557270..3558025 (+)	756	WP_277413695.1	cell division protein ZapD	-
PX653_RS15640 (PX653_15640)	yacG	3558038..3558217 (+)	180	WP_277413696.1	DNA gyrase inhibitor YacG	-
PX653_RS15645 (PX653_15645)	-	3558233..3559387 (+)	1155	WP_277413697.1	FAD-dependent monooxygenase	-
PX653_RS15650 (PX653_15650)	-	3559437..3559835 (-)	399	WP_277413698.1	NUDIX domain-containing protein	-
PX653_RS15655 (PX653_15655)	-	3559832..3560698 (-)	867	WP_277413699.1	ATP-binding protein	-

Sequence

Protein

• Length: 292 a.a.
• Molecular weight: 30982.76 Da
• Isoelectric Point: 7.7414

>NTDB_id=797588 PX653_RS15625 WP_277413694.1 3555571..3556449(+) (pilD) [Pseudoduganella chitinolytica strain ACM 3522]
MLHDLYLFAPPATPGAALLAAIFGLLIGSFLNVVIYRIPVMMKRESDNYVAAESGQPLPHTDRFDLVLPRSACPHCGHRI
TAMENVPVISWLALRGKCSQCKARISARYPLVEAFTGALSALLVWQFGSGAMGLAALLFAYLLIALTFIDADTQLLPDDL
TFPLLWAGLLVNLDGTFVPLQDAVIGAAAGYLVLWTVYWLFKLATGKEGMGYGDFKLLAALGAWLGWTMLPTIILLSSIV
GALVGIGLIVFARHGRGNPIPFGPYLAAAGMIALLFGGPIAGATTRLLGGGA

Nucleotide

• Length: 879 bp

>NTDB_id=797588 PX653_RS15625 WP_277413694.1 3555571..3556449(+) (pilD) [Pseudoduganella chitinolytica strain ACM 3522]
ATGCTCCACGACCTCTACCTCTTCGCCCCACCCGCCACGCCAGGCGCCGCCCTCCTCGCCGCCATCTTCGGCCTCCTGAT
CGGCAGCTTCCTGAACGTCGTCATCTACCGCATTCCCGTCATGATGAAACGCGAGTCGGACAACTACGTGGCGGCCGAAT
CGGGCCAGCCGCTGCCGCACACGGACCGCTTCGACCTGGTGCTGCCACGCTCCGCGTGCCCGCACTGCGGCCATCGGATC
ACGGCCATGGAAAACGTCCCCGTCATCAGCTGGCTGGCGCTGCGCGGCAAGTGCAGCCAGTGCAAGGCCCGCATTTCGGC
GCGCTATCCACTGGTCGAGGCCTTCACGGGCGCCTTGTCCGCGCTGCTGGTATGGCAGTTCGGCAGCGGCGCCATGGGCC
TGGCCGCCTTGCTGTTTGCCTACCTCCTGATCGCGCTGACGTTCATCGATGCCGACACCCAGCTGCTGCCGGACGACCTC
ACGTTTCCCCTCCTGTGGGCCGGCCTGCTCGTTAACCTGGACGGCACCTTCGTGCCGCTGCAGGATGCCGTGATCGGCGC
GGCGGCGGGCTACCTGGTGCTGTGGACCGTGTACTGGCTGTTCAAGCTGGCCACCGGCAAGGAGGGCATGGGCTATGGCG
ACTTCAAGCTCCTGGCGGCGCTGGGCGCCTGGCTGGGCTGGACCATGCTGCCGACGATCATCCTGCTGTCGTCCATCGTC
GGCGCGCTGGTGGGCATCGGCCTGATCGTGTTCGCGCGGCACGGCCGCGGCAATCCCATTCCGTTCGGCCCCTACCTGGC
GGCGGCCGGCATGATCGCGCTGCTGTTCGGCGGCCCGATCGCCGGCGCCACCACCCGCCTCCTGGGCGGTGGCGCGTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-246)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.357	95.89	0.531
pilD	Vibrio campbellii strain DS40M4	53.558	91.438	0.49
pilD	Neisseria gonorrhoeae MS11	50.183	93.493	0.469
pilD	Acinetobacter baumannii D1279779	49.43	90.068	0.445
pilD	Acinetobacter nosocomialis M2	48.669	90.068	0.438