Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PYU98_RS02045 Genome accession   NZ_CP118988
Coordinates   404265..405506 (-) Length   413 a.a.
NCBI ID   WP_234605458.1    Uniprot ID   -
Organism   Aeromonas allosaccharophila strain K520     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 399265..410506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYU98_RS02020 (PYU98_02020) mutT 401254..401658 (+) 405 WP_270794725.1 8-oxo-dGTP diphosphatase MutT -
  PYU98_RS02025 (PYU98_02025) yacG 401736..401936 (-) 201 WP_213392112.1 DNA gyrase inhibitor YacG -
  PYU98_RS02030 (PYU98_02030) zapD 401943..402665 (-) 723 WP_275057314.1 cell division protein ZapD -
  PYU98_RS02035 (PYU98_02035) coaE 402703..403317 (-) 615 WP_275057315.1 dephospho-CoA kinase -
  PYU98_RS02040 (PYU98_02040) pilD 403331..404203 (-) 873 WP_275057316.1 A24 family peptidase Machinery gene
  PYU98_RS02045 (PYU98_02045) pilC 404265..405506 (-) 1242 WP_234605458.1 type II secretion system F family protein Machinery gene
  PYU98_RS02050 (PYU98_02050) pilB 405661..407367 (-) 1707 WP_042058702.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  PYU98_RS02055 (PYU98_02055) - 407371..407808 (-) 438 WP_275057317.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  PYU98_RS02060 (PYU98_02060) nadC 408124..408987 (-) 864 WP_275057318.1 carboxylating nicotinate-nucleotide diphosphorylase -
  PYU98_RS02065 (PYU98_02065) - 408991..409461 (-) 471 WP_275057319.1 retropepsin-like aspartic protease -
  PYU98_RS02070 (PYU98_02070) ampD 409592..410167 (+) 576 WP_275057320.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45426.52 Da        Isoelectric Point: 9.8211

>NTDB_id=797163 PYU98_RS02045 WP_234605458.1 404265..405506(-) (pilC) [Aeromonas allosaccharophila strain K520]
MATLTKKNNAPKKVFAFRWHGVNRKGQKVSGELQADSINTVKAELRKQGVNVTKVAKKSQGLFSKGGAKIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKASMRELMGQIAADVETGTPMSEALRRHPRYFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPVFTQFVIGISRFMQNWWYVFFGGSA
LGIFLYVRAWRASQKVKDNTDKFVLTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVIA
MYLPIFKLGDVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=797163 PYU98_RS02045 WP_234605458.1 404265..405506(-) (pilC) [Aeromonas allosaccharophila strain K520]
ATGGCAACCCTAACCAAGAAGAACAATGCCCCCAAGAAAGTCTTCGCCTTCCGCTGGCACGGGGTAAACCGCAAGGGGCA
GAAGGTCTCCGGCGAGCTGCAGGCTGACAGCATCAACACCGTCAAGGCCGAACTGCGCAAGCAGGGGGTCAACGTCACCA
AGGTGGCCAAGAAATCCCAGGGGCTCTTCTCCAAGGGTGGCGCCAAGATCAAACCGATGGATATCGCCATCGTCTCCCGC
CAGATCACCACCATGCTCTCCGCAGGCGTGCCACTGGTGCAGAGCCTGCAGATCATCGCCCGCAGCCACGAGAAGGCCTC
GATGCGCGAGCTGATGGGGCAGATTGCCGCCGATGTGGAGACCGGCACCCCCATGTCGGAGGCGCTACGCCGCCATCCCC
GCTACTTTGACGATCTCTACTGCGATCTGGTGGAAGCCGGTGAGCAATCCGGTGCGCTGGAGACCATCTACGACCGTATC
GCCACCTATCGGGAAAAGTCGGAGGCGCTCAAGTCGAAGATCAAGAAGGCGATGTTCTACCCCACCATGGTCATTCTGGT
CGCCATTGTGGTGACCTCCATCCTGCTGCTGTTCGTCATTCCGCAGTTCGAGGATATCTTCAAGAGCTTCGGCGCCGAGC
TGCCGGTGTTCACCCAGTTTGTCATCGGCATCTCGCGCTTTATGCAGAACTGGTGGTATGTCTTCTTTGGTGGCTCGGCC
CTTGGCATCTTCCTCTATGTGCGAGCCTGGCGGGCCTCCCAGAAGGTGAAAGACAACACCGACAAGTTTGTACTCACCAT
TCCGGTGGTCGGGATGATCCTACACAAGGCGGCGATGGCTCGCTTTGCCCGCACCCTGTCGACCACCTTCTCCGCCGGTA
TCCCGCTGGTGGATGCGCTGATTTCGGCAGCAGGTGCCTCCGGCAACTATGTCTATCGCACCGCAGTAATGGCTATCCGC
AACGAGGTGGTAGCCGGTATGCAGATCAACGTGGCGATGCGCACCGTCGATCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATCGGTGAGGAGTCCGGTGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAACAGGAGGTGGATGATC
TGGTCGATGGCCTCACCAGTCTGCTGGAACCCCTCATCATGGTGGTACTCGGGGTGCTGGTCGGCGGCATGGTTATCGCC
ATGTACCTGCCCATCTTCAAGCTTGGCGACGTGGTAGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.576

95.884

0.552
  pilC Acinetobacter baumannii D1279779

53.75

96.852

0.521
  pilC Acinetobacter baylyi ADP1

52.882

96.61

0.511
  pilC Legionella pneumophila strain ERS1305867

50.985

98.305

0.501
  pilC Vibrio cholerae strain A1552

46.883

97.094

0.455
  pilC Vibrio campbellii strain DS40M4

45.792

97.821

0.448
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilG Neisseria meningitidis 44/76-A

40

98.063

0.392
  pilC Thermus thermophilus HB27

38

96.852

0.368