Detailed information NTG0797162

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PYU98_RS02040
• Genome accession: NZ_CP118988
• Coordinates: 403331..404203 (-)
• Length: 290 a.a.
• NCBI ID: WP_275057316.1
• Uniprot ID: A0AAX3NUT2
• Organism: Aeromonas allosaccharophila strain K520
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 398331..409203

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PYU98_RS02015 (PYU98_02015)	secA	398348..401068 (+)	2721	WP_275057313.1	preprotein translocase subunit SecA	-
PYU98_RS02020 (PYU98_02020)	mutT	401254..401658 (+)	405	WP_270794725.1	8-oxo-dGTP diphosphatase MutT	-
PYU98_RS02025 (PYU98_02025)	yacG	401736..401936 (-)	201	WP_213392112.1	DNA gyrase inhibitor YacG	-
PYU98_RS02030 (PYU98_02030)	zapD	401943..402665 (-)	723	WP_275057314.1	cell division protein ZapD	-
PYU98_RS02035 (PYU98_02035)	coaE	402703..403317 (-)	615	WP_275057315.1	dephospho-CoA kinase	-
PYU98_RS02040 (PYU98_02040)	pilD	403331..404203 (-)	873	WP_275057316.1	A24 family peptidase	Machinery gene
PYU98_RS02045 (PYU98_02045)	pilC	404265..405506 (-)	1242	WP_234605458.1	type II secretion system F family protein	Machinery gene
PYU98_RS02050 (PYU98_02050)	pilB	405661..407367 (-)	1707	WP_042058702.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
PYU98_RS02055 (PYU98_02055)	-	407371..407808 (-)	438	WP_275057317.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
PYU98_RS02060 (PYU98_02060)	nadC	408124..408987 (-)	864	WP_275057318.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32147.48 Da
• Isoelectric Point: 6.8283

>NTDB_id=797162 PYU98_RS02040 WP_275057316.1 403331..404203(-) (pilD) [Aeromonas allosaccharophila strain K520]
MTLLLELAHGLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFTPDEEATAPERYNLMVPRSACPHCGHA
ITALENIPLLSWLWLKGRCRDCQAPISARYPLVELLTALLSVAVAMVITPGWGALAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGVMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIILLLSSL
VGAVIGISLIALHKHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLSTLL

Nucleotide

• Length: 873 bp

>NTDB_id=797162 PYU98_RS02040 WP_275057316.1 403331..404203(-) (pilD) [Aeromonas allosaccharophila strain K520]
ATGACACTTCTTCTCGAGCTGGCTCACGGCTTGCCCTGGCTCTACTTCTCGCTGGTTTTTCTCTTTTCCCTGATGATCGG
CAGCTTCCTTAACGTGGTGATCCACCGCTTGCCCATCATGCTGGAGCGGGAATGGCAGGCCGAATATCGCAGCTACTTCA
CCCCCGATGAGGAGGCCACTGCGCCAGAGCGCTACAACCTGATGGTACCGCGCTCCGCATGCCCTCACTGTGGTCACGCC
ATCACTGCGCTGGAGAACATCCCGCTGCTGAGCTGGCTCTGGCTCAAAGGGCGTTGTCGCGACTGTCAGGCCCCCATCTC
GGCCCGTTATCCGCTGGTGGAACTGCTGACCGCCCTGCTCTCGGTGGCTGTTGCCATGGTGATTACACCGGGCTGGGGCG
CGCTGGCCGCCCTGCTGCTCACCTGGGTACTGGTGGCCCTCACCTTTATCGATCTCGACAAGATGTTGCTGCCCGACCAG
CTCACCCTGCCACTGCTGTGGGGCGGGCTGCTGTTCAATTTGGCAGGTGGCTTCGTGCCGCTGGCTGATGCCGTGATCGG
TGTCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTCACTGGCAAGGAGGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCCCTCGGCGCCTGGCTCGGCTGGCAGGCGCTGCCCATTATTTTGCTGCTCTCATCCCTG
GTCGGCGCGGTGATCGGCATCAGCCTGATCGCCTTGCACAAACACCATCAGGGCAAGCCCATCCCCTTCGGCCCCTACCT
CGCCATCGCGGGCTGGATCGCCCTGTTGTGGGGCGATACCATCACCCGCTGGTATCTCTCTACCCTGCTTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.49	98.621	0.597
pilD	Vibrio campbellii strain DS40M4	55.401	98.966	0.548
pilD	Acinetobacter baumannii D1279779	54.478	92.414	0.503
pilD	Acinetobacter nosocomialis M2	54.478	92.414	0.503
pilD	Neisseria gonorrhoeae MS11	49.63	93.103	0.462