Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | O6P42_RS12645 | Genome accession | NZ_CP118930 |
| Coordinates | 2575935..2576219 (-) | Length | 94 a.a. |
| NCBI ID | WP_031777211.1 | Uniprot ID | A0AAW6ZWA9 |
| Organism | Vibrio alginolyticus strain V208 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2570935..2581219
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| O6P42_RS12620 (O6P42_12620) | - | 2571432..2572646 (+) | 1215 | WP_005384283.1 | pyridoxal phosphate-dependent aminotransferase | - |
| O6P42_RS12625 (O6P42_12625) | yfbR | 2572738..2573322 (+) | 585 | WP_017634778.1 | 5'-deoxynucleotidase | - |
| O6P42_RS12630 (O6P42_12630) | - | 2573338..2574660 (+) | 1323 | WP_017634779.1 | anti-phage deoxyguanosine triphosphatase | - |
| O6P42_RS12635 (O6P42_12635) | - | 2574667..2575281 (-) | 615 | WP_025766956.1 | DTW domain-containing protein | - |
| O6P42_RS12640 (O6P42_12640) | rrtA | 2575285..2575836 (+) | 552 | WP_005382331.1 | rhombosortase | - |
| O6P42_RS12645 (O6P42_12645) | comEA | 2575935..2576219 (-) | 285 | WP_031777211.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| O6P42_RS12650 (O6P42_12650) | ppiD | 2576475..2578334 (-) | 1860 | WP_258479537.1 | peptidylprolyl isomerase | - |
| O6P42_RS12655 (O6P42_12655) | - | 2578536..2578808 (-) | 273 | WP_005382341.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 94 a.a. Molecular weight: 10336.96 Da Isoelectric Point: 5.1423
>NTDB_id=796440 O6P42_RS12645 WP_031777211.1 2575935..2576219(-) (comEA) [Vibrio alginolyticus strain V208]
MKWILTLCLFVFAPFSMAADSATDKYEGIEITVNINTATAEEIATMLKGIGEKKAQSIVDYREEHGPFKTAADLKSVKGI
GEATVKKNEDRILL
MKWILTLCLFVFAPFSMAADSATDKYEGIEITVNINTATAEEIATMLKGIGEKKAQSIVDYREEHGPFKTAADLKSVKGI
GEATVKKNEDRILL
Nucleotide
Download Length: 285 bp
>NTDB_id=796440 O6P42_RS12645 WP_031777211.1 2575935..2576219(-) (comEA) [Vibrio alginolyticus strain V208]
ATGAAATGGATTTTGACATTGTGCTTATTTGTTTTTGCACCTTTTAGCATGGCTGCGGATTCAGCCACTGACAAATATGA
AGGAATTGAAATTACTGTAAATATCAACACGGCCACTGCTGAAGAAATTGCGACCATGTTGAAAGGTATAGGTGAGAAGA
AAGCGCAGAGTATAGTGGACTACCGCGAGGAACATGGCCCTTTTAAAACGGCAGCAGATTTGAAGAGCGTAAAAGGCATA
GGTGAAGCGACAGTTAAGAAAAACGAAGACCGCATTTTACTGTAG
ATGAAATGGATTTTGACATTGTGCTTATTTGTTTTTGCACCTTTTAGCATGGCTGCGGATTCAGCCACTGACAAATATGA
AGGAATTGAAATTACTGTAAATATCAACACGGCCACTGCTGAAGAAATTGCGACCATGTTGAAAGGTATAGGTGAGAAGA
AAGCGCAGAGTATAGTGGACTACCGCGAGGAACATGGCCCTTTTAAAACGGCAGCAGATTTGAAGAGCGTAAAAGGCATA
GGTGAAGCGACAGTTAAGAAAAACGAAGACCGCATTTTACTGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
88.298 |
100 |
0.883 |
| comEA | Vibrio campbellii strain DS40M4 |
75.789 |
100 |
0.766 |
| comEA | Vibrio cholerae C6706 |
60.87 |
97.872 |
0.596 |
| comEA | Vibrio cholerae strain A1552 |
60.87 |
97.872 |
0.596 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
50.617 |
86.17 |
0.436 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
59.677 |
65.957 |
0.394 |
| comEA | Legionella pneumophila str. Paris |
36.842 |
100 |
0.372 |
| comEA | Legionella pneumophila strain ERS1305867 |
36.842 |
100 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
37.778 |
95.745 |
0.362 |
| comE | Neisseria gonorrhoeae MS11 |
37.778 |
95.745 |
0.362 |
| comE | Neisseria gonorrhoeae MS11 |
37.778 |
95.745 |
0.362 |
| comE | Neisseria gonorrhoeae MS11 |
37.778 |
95.745 |
0.362 |
| comEA/celA/cilE | Streptococcus pneumoniae TIGR4 |
38.202 |
94.681 |
0.362 |