Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   PWO49_RS13700 Genome accession   NZ_CP118916
Coordinates   3044856..3045320 (+) Length   154 a.a.
NCBI ID   WP_210797577.1    Uniprot ID   -
Organism   Pseudoalteromonas ostreae strain hOe-124     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3039856..3050320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWO49_RS13680 pdhR 3040561..3041310 (-) 750 WP_210797581.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -
  PWO49_RS13685 ampE 3041658..3042509 (-) 852 WP_210797580.1 beta-lactamase regulator AmpE -
  PWO49_RS13690 ampD 3042558..3043100 (-) 543 WP_210797579.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  PWO49_RS13695 nadC 3043482..3044327 (+) 846 WP_210797578.1 carboxylating nicotinate-nucleotide diphosphorylase -
  PWO49_RS13700 pilE 3044856..3045320 (+) 465 WP_210797577.1 pilin Machinery gene
  PWO49_RS13705 - 3045649..3046692 (+) 1044 WP_228732993.1 O-antigen ligase family protein -
  PWO49_RS13710 pilC 3046695..3047924 (+) 1230 WP_210797575.1 type II secretion system F family protein Machinery gene
  PWO49_RS13715 pilD 3048519..3049418 (+) 900 WP_210797574.1 A24 family peptidase Machinery gene
  PWO49_RS13720 coaE 3049420..3050055 (+) 636 WP_210797573.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 15841.05 Da        Isoelectric Point: 6.2043

>NTDB_id=796317 PWO49_RS13700 WP_210797577.1 3044856..3045320(+) (pilE) [Pseudoalteromonas ostreae strain hOe-124]
MEKMTQQNQKGFTLIELMIVVAIIGILAAVALPAYQDYTTRAKMSEVVTFAGSAKTAVSECAITTGDTTLAACNSNSKVG
LDPTATNISSTYVESVTVGTGGVVTAAIQGTSVTALDGGSLTFTPTATSGSVSWKCEISAATLNKYVPQNCRKS

Nucleotide


Download         Length: 465 bp        

>NTDB_id=796317 PWO49_RS13700 WP_210797577.1 3044856..3045320(+) (pilE) [Pseudoalteromonas ostreae strain hOe-124]
ATGGAAAAAATGACACAACAAAATCAAAAGGGTTTTACCCTAATTGAATTAATGATTGTAGTAGCAATCATCGGTATTTT
GGCAGCAGTCGCGTTACCTGCCTATCAAGATTATACTACTCGTGCGAAAATGAGTGAAGTTGTTACTTTTGCTGGCTCAG
CTAAAACAGCAGTTAGTGAATGCGCAATCACAACAGGAGACACAACACTTGCCGCATGTAACAGTAATTCAAAAGTAGGA
TTGGATCCTACTGCAACTAACATATCTTCTACTTATGTAGAATCAGTAACAGTTGGAACTGGTGGTGTCGTTACTGCAGC
AATCCAGGGTACCTCTGTTACGGCACTTGATGGTGGTTCACTTACATTCACGCCTACAGCAACTAGTGGAAGTGTCAGCT
GGAAGTGCGAAATAAGCGCAGCAACGTTAAACAAATATGTGCCACAAAACTGCCGTAAAAGCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)

Pilin (bacterial filament) (Pilin)

(40-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

40.217

100

0.481
  pilA2 Legionella pneumophila strain ERS1305867

49.315

94.805

0.468
  pilA2 Legionella pneumophila str. Paris

49.315

94.805

0.468
  pilA Ralstonia pseudosolanacearum GMI1000

39.106

100

0.455
  comP Acinetobacter baylyi ADP1

44.371

98.052

0.435
  pilE Neisseria gonorrhoeae strain FA1090

40.625

100

0.422
  pilA/pilA1 Eikenella corrodens VA1

38.994

100

0.403
  pilE Neisseria gonorrhoeae MS11

46.512

83.766

0.39
  pilA/pilAI Pseudomonas stutzeri DSM 10701

38.667

97.403

0.377