Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   PWO49_RS13715 Genome accession   NZ_CP118916
Coordinates   3048519..3049418 (+) Length   299 a.a.
NCBI ID   WP_210797574.1    Uniprot ID   -
Organism   Pseudoalteromonas ostreae strain hOe-124     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3043519..3054418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWO49_RS13700 pilE 3044856..3045320 (+) 465 WP_210797577.1 pilin Machinery gene
  PWO49_RS13705 - 3045649..3046692 (+) 1044 WP_228732993.1 O-antigen ligase family protein -
  PWO49_RS13710 pilC 3046695..3047924 (+) 1230 WP_210797575.1 type II secretion system F family protein Machinery gene
  PWO49_RS13715 pilD 3048519..3049418 (+) 900 WP_210797574.1 A24 family peptidase Machinery gene
  PWO49_RS13720 coaE 3049420..3050055 (+) 636 WP_210797573.1 dephospho-CoA kinase -
  PWO49_RS13725 pilB 3050192..3051871 (+) 1680 WP_210797572.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PWO49_RS13730 yacG 3051939..3052169 (+) 231 WP_210797571.1 DNA gyrase inhibitor YacG -
  PWO49_RS13735 - 3052268..3053440 (-) 1173 WP_210797664.1 divalent metal cation transporter -
  PWO49_RS13740 raiA 3053634..3053990 (-) 357 WP_145235189.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 33244.86 Da        Isoelectric Point: 6.8417

>NTDB_id=796319 PWO49_RS13715 WP_210797574.1 3048519..3049418(+) (pilD) [Pseudoalteromonas ostreae strain hOe-124]
MQNFFLDIITVMQSQLWFYLLTVGLVSLCIGSFLNVVIYRLPIMMQREWQTECRVLLADDLKPTKADNTEAELNLVKPNS
TCPKCKTAIKPWQNIPVISWLLLKGRCASCSNPISVRYPIVEMLTAILSLIVAYTFGATEQSLLYILITWLLVTLTFIDI
DHMLLPDQLTLPLLWLALIASVMGITILPTDAIIGAACGYLSLWSVFWLFKLITGKEGMGYGDFKLLAVFGALLGWQSLL
TIVLLSSVVGAIIGIALLSIQGKDKATPIPFGPYLAIAGWVTLLWGTQIQVFYFNLLGY

Nucleotide


Download         Length: 900 bp        

>NTDB_id=796319 PWO49_RS13715 WP_210797574.1 3048519..3049418(+) (pilD) [Pseudoalteromonas ostreae strain hOe-124]
ATGCAAAATTTCTTTCTTGATATAATCACAGTAATGCAAAGCCAATTATGGTTTTATTTACTCACTGTTGGCTTAGTGAG
CCTGTGTATTGGCAGTTTTTTGAATGTAGTTATTTACCGGCTGCCGATAATGATGCAGCGTGAATGGCAAACAGAATGCC
GTGTTTTACTGGCTGACGATTTAAAACCTACAAAAGCTGATAATACAGAAGCTGAATTAAATCTAGTAAAGCCCAACTCG
ACCTGCCCAAAATGCAAAACGGCCATTAAGCCTTGGCAAAACATTCCTGTTATTAGCTGGTTATTGCTAAAAGGTCGCTG
CGCCAGTTGCAGTAACCCAATCTCAGTACGATACCCAATTGTTGAAATGCTTACTGCTATTTTAAGTTTAATAGTGGCCT
ACACTTTTGGCGCGACTGAGCAATCACTACTATATATTTTAATTACTTGGCTGCTTGTTACCCTGACCTTTATTGATATT
GACCATATGCTGCTACCCGATCAACTCACCTTACCTTTACTCTGGCTAGCATTAATTGCCTCGGTAATGGGCATCACTAT
CTTACCTACTGATGCGATTATTGGTGCAGCTTGTGGTTACTTAAGCCTTTGGAGCGTATTTTGGCTGTTTAAACTGATCA
CCGGGAAAGAAGGTATGGGCTACGGTGATTTTAAATTACTGGCGGTATTTGGCGCATTGCTTGGCTGGCAATCATTACTC
ACCATTGTTTTATTATCAAGTGTAGTGGGCGCTATTATTGGTATCGCATTATTGAGTATTCAAGGCAAAGATAAAGCCAC
GCCAATTCCATTTGGGCCTTATTTAGCCATTGCCGGTTGGGTTACTTTGTTATGGGGCACACAAATCCAAGTATTTTATT
TTAATTTGTTAGGTTATTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(26-136)

Type IV leader peptidase family (Peptidase_A24)

(147-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

53.31

95.987

0.512
  pilD Acinetobacter nosocomialis M2

52.595

96.656

0.508
  pilD Vibrio cholerae strain A1552

52.837

94.314

0.498
  pilD Vibrio campbellii strain DS40M4

51.736

96.321

0.498
  pilD Neisseria gonorrhoeae MS11

44.574

86.288

0.385