Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PYV58_RS20435 Genome accession   NZ_CP118892
Coordinates   4365297..4366526 (+) Length   409 a.a.
NCBI ID   WP_034613611.1    Uniprot ID   A0AAX3PKL0
Organism   Acinetobacter sp. TAC-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4360297..4371526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYV58_RS20395 (PYV58_20395) rimP 4360819..4361343 (-) 525 WP_004818614.1 ribosome maturation factor RimP -
  PYV58_RS20420 (PYV58_20420) secG 4362134..4362475 (-) 342 WP_034613616.1 preprotein translocase subunit SecG -
  PYV58_RS20425 (PYV58_20425) tpiA 4362485..4363279 (-) 795 WP_034613615.1 triose-phosphate isomerase -
  PYV58_RS20430 (PYV58_20430) pilB 4363557..4365269 (+) 1713 WP_275059652.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PYV58_RS20435 (PYV58_20435) pilC 4365297..4366526 (+) 1230 WP_034613611.1 type II secretion system F family protein Machinery gene
  PYV58_RS20440 (PYV58_20440) pilD 4366532..4367413 (+) 882 WP_171077762.1 A24 family peptidase Machinery gene
  PYV58_RS20445 (PYV58_20445) coaE 4367440..4368039 (+) 600 WP_034613606.1 dephospho-CoA kinase -
  PYV58_RS20450 (PYV58_20450) - 4368108..4369019 (-) 912 WP_034613603.1 DMT family transporter -
  PYV58_RS20455 (PYV58_20455) rlmB 4369058..4369813 (-) 756 WP_004818598.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  PYV58_RS20460 (PYV58_20460) - 4369974..4370297 (-) 324 WP_004718357.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45189.67 Da        Isoelectric Point: 10.0430

>NTDB_id=796116 PYV58_RS20435 WP_034613611.1 4365297..4366526(+) (pilC) [Acinetobacter sp. TAC-1]
MAAKKAQMMPTFAYDGVDRKGIKVKGELPARNMALAKVTLRKQGITIKTIREKKKNFLEGLMKKGISTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALRKYPRHFDSLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPISVIVVAIIVTIILMVKVVPVFQDLFSSFGADLPAFTQLVVNMSNWMQKYWFILILFIAVVIT
AFLEAKKRSKKFQNFLDRTALRLPIFGDLVYKAIIARYSRTLATTFAAGVPLIEALESTAGATNNVVYEQAVMKIREDVA
TGQQLNFAMRVTNRFPSMAIQMVAIGEESGALDAMLDKVATHFENEVDNAVDGLTSMMEPLIMAILGILVGGLVIAMYLP
IFQMGSVIS

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=796116 PYV58_RS20435 WP_034613611.1 4365297..4366526(+) (pilC) [Acinetobacter sp. TAC-1]
ATGGCAGCTAAAAAAGCTCAAATGATGCCTACATTTGCTTATGACGGGGTTGATCGTAAAGGGATCAAAGTTAAAGGGGA
GTTACCTGCTCGAAATATGGCACTAGCCAAAGTTACCTTACGTAAACAAGGCATCACCATTAAAACCATTCGAGAAAAAA
AGAAAAATTTTCTTGAAGGTTTAATGAAAAAAGGCATTTCCACTTTAGATATTACCATTTTTACTCGTCAACTCGCCACG
ATGATGAAAGCAGGTGTGCCATTAGTGCAAAGTTTTGAAATCGTTGCAGAAGGCTTAGAGAACCCCTCTATGCGTGAAGT
GGTACTGGGAATCAAAGGTGAAGTTGAAGGAGGCAATACTTTTGCTGGCGCGCTAAGAAAATATCCACGACATTTTGACA
GCTTATTTTGTTCATTGGTTGAATCTGGCGAACAATCTGGCGCCTTAGAGACTATGCTCGATCGTGTAGCAATCTACAAA
GAAAAAAGTGAATTACTAAAACAAAAAATTAAAAAAGCCATGAAATATCCAATCTCTGTAATTGTTGTCGCGATTATTGT
TACCATTATTTTAATGGTGAAAGTGGTGCCTGTATTTCAGGATTTATTTAGCTCTTTTGGTGCAGACTTACCCGCATTTA
CTCAGCTGGTCGTCAATATGTCCAATTGGATGCAAAAATATTGGTTTATTCTAATCCTATTTATAGCTGTTGTAATTACT
GCTTTTTTGGAAGCAAAAAAACGCAGTAAGAAGTTTCAAAATTTTCTAGACCGAACAGCACTGAGACTGCCTATTTTTGG
CGATCTAGTCTATAAAGCCATCATTGCACGTTATAGCCGCACCCTTGCCACAACATTTGCGGCTGGTGTACCGCTCATCG
AAGCATTAGAATCAACAGCAGGTGCAACCAATAATGTGGTTTATGAACAAGCAGTAATGAAAATTCGTGAAGATGTAGCC
ACCGGGCAACAGCTTAATTTTGCCATGCGTGTCACCAATAGATTTCCTTCTATGGCCATTCAAATGGTCGCTATTGGGGA
GGAATCTGGTGCATTGGATGCAATGTTGGATAAAGTTGCAACACATTTTGAAAATGAAGTCGACAATGCTGTGGATGGCT
TAACCTCAATGATGGAGCCGTTAATTATGGCTATTTTAGGCATACTTGTGGGTGGCTTAGTCATTGCAATGTATCTTCCA
ATCTTCCAAATGGGATCAGTGATTAGTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

87.5

99.756

0.873
  pilC Acinetobacter baylyi ADP1

84.804

99.756

0.846
  pilC Pseudomonas stutzeri DSM 10701

59.113

99.267

0.587
  pilC Legionella pneumophila strain ERS1305867

53.58

99.022

0.531
  pilG Neisseria gonorrhoeae MS11

46.366

97.555

0.452
  pilG Neisseria meningitidis 44/76-A

46.366

97.555

0.452
  pilC Vibrio cholerae strain A1552

42.506

99.511

0.423
  pilC Vibrio campbellii strain DS40M4

41.337

98.778

0.408
  pilC Thermus thermophilus HB27

37.192

99.267

0.369