Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   PYV58_RS20440 Genome accession   NZ_CP118892
Coordinates   4366532..4367413 (+) Length   293 a.a.
NCBI ID   WP_171077762.1    Uniprot ID   A0AAX3PJW1
Organism   Acinetobacter sp. TAC-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4361532..4372413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYV58_RS20420 (PYV58_20420) secG 4362134..4362475 (-) 342 WP_034613616.1 preprotein translocase subunit SecG -
  PYV58_RS20425 (PYV58_20425) tpiA 4362485..4363279 (-) 795 WP_034613615.1 triose-phosphate isomerase -
  PYV58_RS20430 (PYV58_20430) pilB 4363557..4365269 (+) 1713 WP_275059652.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PYV58_RS20435 (PYV58_20435) pilC 4365297..4366526 (+) 1230 WP_034613611.1 type II secretion system F family protein Machinery gene
  PYV58_RS20440 (PYV58_20440) pilD 4366532..4367413 (+) 882 WP_171077762.1 A24 family peptidase Machinery gene
  PYV58_RS20445 (PYV58_20445) coaE 4367440..4368039 (+) 600 WP_034613606.1 dephospho-CoA kinase -
  PYV58_RS20450 (PYV58_20450) - 4368108..4369019 (-) 912 WP_034613603.1 DMT family transporter -
  PYV58_RS20455 (PYV58_20455) rlmB 4369058..4369813 (-) 756 WP_004818598.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  PYV58_RS20460 (PYV58_20460) - 4369974..4370297 (-) 324 WP_004718357.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 32807.38 Da        Isoelectric Point: 7.8086

>NTDB_id=796117 PYV58_RS20440 WP_171077762.1 4366532..4367413(+) (pilD) [Acinetobacter sp. TAC-1]
MNMLNDLLNFLIQSPIALYLTVGILGLCVGSFLNVVIYRTPKMMEKEWRQEWHAECQLLAGSQQIVIDEEKLSLSQPAST
CPKCKTPIRWYQNIPIISWLVLRGKCASCQNPISIRYPLVELLTAVCSLTVLAVYGPTLEMVFGVLLTWVLITLTFIDFD
TQLLPDRFTLTLAAMGLGINSFHLYTTPNAAIWGYIIGFLCLWIVYYLFKIVTGKEGMGYGDFKLLAALGAWMGPLMLPL
IILLSSVVGAIIGIILLKIRKENVPFAFGPYIAIAGWIAFLWGEQIMKVYLGQ

Nucleotide


Download         Length: 882 bp        

>NTDB_id=796117 PYV58_RS20440 WP_171077762.1 4366532..4367413(+) (pilD) [Acinetobacter sp. TAC-1]
ATGAACATGCTCAATGATTTATTAAATTTTCTGATTCAATCACCAATAGCACTCTATCTGACTGTTGGTATTTTAGGGTT
ATGTGTTGGTAGCTTTTTAAATGTAGTCATTTACCGTACTCCCAAGATGATGGAAAAAGAATGGCGACAGGAATGGCATG
CAGAATGCCAATTACTGGCAGGCTCACAACAGATTGTGATTGATGAAGAAAAACTCAGTCTCAGTCAACCAGCCTCTACC
TGTCCCAAATGTAAAACCCCAATTCGCTGGTATCAAAATATTCCCATCATCAGTTGGTTGGTTTTAAGAGGCAAATGCGC
TTCGTGTCAAAACCCAATTAGTATTCGTTACCCATTGGTTGAGCTTTTAACTGCAGTGTGTTCATTAACAGTGCTTGCTG
TTTATGGCCCCACTTTAGAAATGGTTTTTGGTGTGCTACTGACTTGGGTACTGATCACACTTACATTTATTGATTTTGAC
ACTCAGTTACTTCCAGACCGCTTTACCTTAACCTTGGCGGCAATGGGTTTAGGCATTAACTCATTCCATTTATATACAAC
ACCAAATGCGGCAATTTGGGGTTATATTATTGGTTTCCTGTGTCTTTGGATTGTCTACTATCTATTTAAAATAGTGACAG
GCAAAGAAGGCATGGGCTATGGTGACTTTAAGCTGCTTGCTGCACTTGGCGCTTGGATGGGGCCATTGATGTTACCGTTA
ATTATCCTACTGTCTTCTGTAGTGGGTGCGATCATTGGTATTATTTTACTTAAGATTCGTAAAGAAAATGTCCCTTTTGC
CTTTGGTCCTTATATTGCAATTGCAGGATGGATTGCATTTTTATGGGGTGAGCAAATTATGAAAGTATATTTGGGTCAAT
AA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(146-254)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(24-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

73.356

98.635

0.724
  pilD Acinetobacter baumannii D1279779

73.01

98.635

0.72
  pilD Vibrio campbellii strain DS40M4

54.545

93.857

0.512
  pilD Vibrio cholerae strain A1552

53.676

92.833

0.498
  pilD Neisseria gonorrhoeae MS11

46.403

94.881

0.44