Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PW252_RS00770 Genome accession   NZ_CP118735
Coordinates   121599..121994 (+) Length   131 a.a.
NCBI ID   WP_248049601.1    Uniprot ID   A0AA97A2V6
Organism   Streptococcus iners strain 29887     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 116599..126994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PW252_RS00740 (PW252_00740) pepA 117281..118342 (-) 1062 WP_248049595.1 glutamyl aminopeptidase -
  PW252_RS00745 (PW252_00745) - 118489..118773 (+) 285 WP_044753388.1 DUF4651 domain-containing protein -
  PW252_RS00750 (PW252_00750) - 118770..119090 (+) 321 WP_248049596.1 thioredoxin family protein -
  PW252_RS00755 (PW252_00755) - 119134..120090 (+) 957 WP_248049597.1 DUF1002 domain-containing protein -
  PW252_RS00760 (PW252_00760) ytpR 120109..120732 (+) 624 WP_248049598.1 YtpR family tRNA-binding protein -
  PW252_RS00765 (PW252_00765) - 120765..121544 (-) 780 WP_248049600.1 DUF2785 domain-containing protein -
  PW252_RS00770 (PW252_00770) ssbA 121599..121994 (+) 396 WP_248049601.1 single-stranded DNA-binding protein Machinery gene
  PW252_RS00775 (PW252_00775) groES 122236..122517 (+) 282 WP_014637330.1 co-chaperone GroES -
  PW252_RS00780 (PW252_00780) groL 122609..124231 (+) 1623 WP_099832326.1 chaperonin GroEL -
  PW252_RS00785 (PW252_00785) rpsL 124462..124875 (+) 414 WP_002940030.1 30S ribosomal protein S12 -
  PW252_RS00790 (PW252_00790) rpsG 124892..125362 (+) 471 WP_002940031.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14852.73 Da        Isoelectric Point: 4.9937

>NTDB_id=794723 PW252_RS00770 WP_248049601.1 121599..121994(+) (ssbA) [Streptococcus iners strain 29887]
MYNKTILIGRLTAQPELTQTPNGKNLTRVTVAVNRRFKTENGERDADFLNVIFWGKLAETLVSYGSKGSLISVDGELRTR
KYEKDGSNHYVTEILGNTFQLLESRAQRAMRETNAVDDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=794723 PW252_RS00770 WP_248049601.1 121599..121994(+) (ssbA) [Streptococcus iners strain 29887]
ATGTATAATAAAACAATTTTAATCGGTCGCTTGACGGCCCAACCTGAACTCACTCAAACACCTAACGGGAAAAACTTGAC
TCGTGTGACCGTCGCGGTCAACCGCCGTTTTAAGACGGAAAATGGTGAACGTGATGCAGACTTTTTGAATGTTATTTTCT
GGGGCAAACTGGCGGAAACACTTGTTTCCTATGGTAGCAAGGGCAGTCTGATTTCTGTTGACGGTGAGTTGCGGACCCGT
AAATATGAAAAAGACGGCAGCAATCACTATGTGACTGAAATCTTGGGCAATACTTTCCAGTTACTCGAAAGCCGTGCCCA
ACGGGCCATGCGAGAAACTAATGCTGTCGATGACCTAGCTGACTTAGTTCTGGAAGAGGAGGAATTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

74.809

100

0.748
  ssbB Streptococcus sobrinus strain NIDR 6715-7

73.282

100

0.733
  ssbB/cilA Streptococcus pneumoniae TIGR4

71.756

100

0.718
  ssbB/cilA Streptococcus mitis NCTC 12261

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae Rx1

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae D39

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae R6

70.992

100

0.71
  ssbB/cilA Streptococcus mitis SK321

70.992

100

0.71
  ssbB Lactococcus lactis subsp. cremoris KW2

64.286

85.496

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

44.248

86.26

0.382
  ssbA Bacillus subtilis subsp. subtilis str. 168

46.226

80.916

0.374