Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PXH68_RS04435 Genome accession   NZ_CP118733
Coordinates   955198..956040 (+) Length   280 a.a.
NCBI ID   WP_248027933.1    Uniprot ID   A0AA96VGV9
Organism   Streptococcus suivaginalis strain 29896     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 950198..961040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXH68_RS04405 (PXH68_04405) ylqF 950540..951391 (+) 852 WP_248027943.1 ribosome biogenesis GTPase YlqF -
  PXH68_RS04410 (PXH68_04410) - 951378..952151 (+) 774 WP_248027941.1 ribonuclease HII -
  PXH68_RS04415 (PXH68_04415) - 952154..953164 (+) 1011 WP_248027938.1 YdcF family protein -
  PXH68_RS04420 (PXH68_04420) - 953203..953514 (-) 312 WP_205030719.1 rhodanese-like domain-containing protein -
  PXH68_RS04425 (PXH68_04425) - 953650..954228 (+) 579 WP_248027936.1 sugar O-acetyltransferase -
  PXH68_RS04430 (PXH68_04430) - 954206..955156 (+) 951 WP_248027935.1 ROK family protein -
  PXH68_RS04435 (PXH68_04435) dprA 955198..956040 (+) 843 WP_248027933.1 DNA-processing protein DprA Machinery gene
  PXH68_RS04440 (PXH68_04440) topA 956159..958252 (+) 2094 WP_248027931.1 type I DNA topoisomerase -
  PXH68_RS04445 (PXH68_04445) - 958344..959027 (+) 684 WP_248027929.1 HAD family hydrolase -
  PXH68_RS04450 (PXH68_04450) - 959510..960379 (-) 870 WP_248027927.1 acyltransferase -

Sequence

Protein


Download         Length: 280 a.a.        Molecular weight: 31269.46 Da        Isoelectric Point: 9.2775

>NTDB_id=794626 PXH68_RS04435 WP_248027933.1 955198..956040(+) (dprA) [Streptococcus suivaginalis strain 29896]
MNNFELFKLKMAGLSNLQLNRLLAAYQDSTKKISLKAICHILDLKKPSLFMENYHSLDSKECRKLFQRFPSFSILDDTYP
LELKQIYNPPVLLFYQGDLSLLNRTKIGIVGSRKASPEGVKSTEKIIKELQNQFVIVSGLARGIDTAAHMACLKNGGKTI
AVIGSGLDQYYPKENKALQDYLSKHHLVLSEYPAGTQPLKFHFPERNRIIAGLSMGVVVAEARLRSGSLITCERALEEGR
EVFAIPGSILEQNWLGCLQLIKEGANCITSGIDVINELKK

Nucleotide


Download         Length: 843 bp        

>NTDB_id=794626 PXH68_RS04435 WP_248027933.1 955198..956040(+) (dprA) [Streptococcus suivaginalis strain 29896]
ATGAACAATTTCGAACTATTTAAACTAAAGATGGCTGGTCTCAGCAATTTGCAACTCAACCGCCTCTTGGCTGCTTACCA
AGATTCTACTAAAAAGATCAGTTTAAAAGCAATCTGTCACATTTTAGACTTGAAGAAACCCAGTCTTTTCATGGAAAACT
ACCATTCTTTGGATAGCAAGGAATGCCGCAAGCTGTTTCAACGTTTTCCTTCCTTTTCAATTCTTGACGATACTTATCCC
TTAGAATTGAAACAGATCTACAATCCCCCTGTCTTGTTGTTTTATCAAGGAGATTTGAGTTTGTTGAACCGTACTAAGAT
TGGTATTGTCGGCTCTCGAAAAGCTAGCCCAGAAGGGGTCAAGTCAACTGAAAAAATCATAAAAGAACTCCAAAATCAAT
TTGTAATAGTCAGTGGATTGGCTCGAGGGATTGATACGGCGGCCCATATGGCTTGTTTGAAGAATGGTGGAAAGACCATC
GCAGTGATTGGTTCTGGTTTGGACCAGTATTATCCAAAGGAAAACAAGGCCTTACAGGACTATCTATCCAAGCACCATTT
GGTTTTATCAGAATATCCCGCAGGAACCCAGCCCTTGAAATTTCATTTTCCTGAGCGCAACCGAATCATCGCAGGGCTAT
CTATGGGGGTGGTAGTTGCAGAAGCTCGCTTACGGTCTGGAAGTTTGATTACTTGCGAACGAGCCTTGGAAGAAGGTCGA
GAAGTATTTGCTATTCCTGGTAGTATTTTAGAGCAAAATTGGCTTGGATGTTTGCAATTGATAAAAGAAGGGGCAAACTG
CATTACATCAGGCATTGACGTGATCAATGAACTAAAAAAATAA

Domains

Predicted by InterproScan.

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-61)

DNA recombination-mediator protein A (DNA_processg_A)

(73-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

64.748

99.286

0.643
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

59.498

99.643

0.593
  dprA/cilB/dalA Streptococcus pneumoniae D39

59.498

99.643

0.593
  dprA/cilB/dalA Streptococcus pneumoniae R6

59.498

99.643

0.593
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

59.498

99.643

0.593
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

59.498

99.643

0.593
  dprA/cilB/dalA Streptococcus mitis SK321

59.498

99.643

0.593
  dprA Lactococcus lactis subsp. cremoris KW2

54.513

98.929

0.539
  dprA Vibrio cholerae strain A1552

39.209

99.286

0.389
  dprA Staphylococcus aureus MW2

36.972

100

0.375
  dprA Latilactobacillus sakei subsp. sakei 23K

39.924

93.929

0.375
  dprA Haemophilus influenzae Rd KW20

38.577

95.357

0.368
  dprA Staphylococcus aureus N315

36.525

100

0.368
  dprA Bacillus subtilis subsp. subtilis str. 168

48.571

75

0.364