Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PXH68_RS00715 Genome accession   NZ_CP118733
Coordinates   112085..112480 (+) Length   131 a.a.
NCBI ID   WP_248028790.1    Uniprot ID   A0AA96VEP9
Organism   Streptococcus suivaginalis strain 29896     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 107085..117480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXH68_RS00685 (PXH68_00685) - 107270..108526 (+) 1257 WP_248028794.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  PXH68_RS00690 (PXH68_00690) pepA 108571..109632 (-) 1062 WP_205031712.1 glutamyl aminopeptidase -
  PXH68_RS00695 (PXH68_00695) - 109794..110075 (+) 282 WP_202848378.1 DUF4651 domain-containing protein -
  PXH68_RS00700 (PXH68_00700) - 110072..110392 (+) 321 WP_248028793.1 thioredoxin family protein -
  PXH68_RS00705 (PXH68_00705) - 110415..111374 (+) 960 WP_248028792.1 DUF1002 domain-containing protein -
  PXH68_RS00710 (PXH68_00710) ytpR 111393..112016 (+) 624 WP_248028791.1 YtpR family tRNA-binding protein -
  PXH68_RS00715 (PXH68_00715) ssbA 112085..112480 (+) 396 WP_248028790.1 single-stranded DNA-binding protein Machinery gene
  PXH68_RS00720 (PXH68_00720) groES 112726..113007 (+) 282 WP_248028789.1 co-chaperone GroES -
  PXH68_RS00725 (PXH68_00725) groL 113019..114641 (+) 1623 WP_248028788.1 chaperonin GroEL -
  PXH68_RS00730 (PXH68_00730) rpsL 114872..115285 (+) 414 WP_002940030.1 30S ribosomal protein S12 -
  PXH68_RS00735 (PXH68_00735) rpsG 115302..115772 (+) 471 WP_002940031.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14865.73 Da        Isoelectric Point: 5.0114

>NTDB_id=794614 PXH68_RS00715 WP_248028790.1 112085..112480(+) (ssbA) [Streptococcus suivaginalis strain 29896]
MYNKTILIGRLTAQPELTQTPNGKNLTRVTVAVNRRFKTENGEREADFLNVIFWGKLAETLVSYGSKGSLISIDGELRTR
KYEKDGSNHYVTEILGNTFQLLESRAQRAMRENNAGEDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=794614 PXH68_RS00715 WP_248028790.1 112085..112480(+) (ssbA) [Streptococcus suivaginalis strain 29896]
ATGTACAATAAAACAATTTTAATCGGTCGTTTGACGGCCCAACCTGAACTCACTCAAACCCCTAACGGCAAAAATTTGAC
TCGTGTAACCGTCGCAGTTAATCGACGATTTAAGACAGAAAATGGTGAACGTGAGGCAGATTTTCTCAATGTTATTTTCT
GGGGAAAACTGGCAGAAACACTAGTCTCCTATGGCAGCAAGGGCAGTCTGATTTCTATTGACGGTGAGTTGCGGACCCGT
AAATATGAAAAAGACGGCAGCAACCACTATGTAACGGAAATCTTGGGCAATACCTTCCAGTTGCTCGAAAGCCGCGCTCA
ACGTGCCATGCGTGAAAACAATGCCGGTGAAGACTTGGCTGATCTGGTCTTGGAAGAGGAAGAATTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

75.573

100

0.756
  ssbB Streptococcus sobrinus strain NIDR 6715-7

74.046

100

0.74
  ssbB/cilA Streptococcus pneumoniae TIGR4

73.282

100

0.733
  ssbB/cilA Streptococcus pneumoniae Rx1

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae D39

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae R6

72.519

100

0.725
  ssbB/cilA Streptococcus mitis NCTC 12261

72.519

100

0.725
  ssbB/cilA Streptococcus mitis SK321

72.519

100

0.725
  ssbB Lactococcus lactis subsp. cremoris KW2

64.286

85.496

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

44.248

86.26

0.382
  ssbA Bacillus subtilis subsp. subtilis str. 168

46.226

80.916

0.374