Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   KH172YL63_RS00020 Genome accession   NZ_AP022842
Coordinates   3645..4763 (+) Length   372 a.a.
NCBI ID   WP_173104256.1    Uniprot ID   A0A6F8TLP3
Organism   Bacillus sp. KH172YL63     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KH172YL63_RS00005 (KH172YL63_00010) dnaA 101..1447 (+) 1347 WP_173104253.1 chromosomal replication initiator protein DnaA -
  KH172YL63_RS00010 (KH172YL63_00020) dnaN 1654..2790 (+) 1137 WP_173104254.1 DNA polymerase III subunit beta -
  KH172YL63_RS00015 (KH172YL63_00030) yaaA 3409..3627 (+) 219 WP_173104255.1 S4 domain-containing protein YaaA -
  KH172YL63_RS00020 (KH172YL63_00040) recF 3645..4763 (+) 1119 WP_173104256.1 DNA replication/repair protein RecF Machinery gene
  KH172YL63_RS00025 (KH172YL63_00050) - 4773..5027 (+) 255 WP_173104257.1 extracellular matrix/biofilm biosynthesis regulator RemA family protein -
  KH172YL63_RS00030 (KH172YL63_00060) gyrB 5077..7002 (+) 1926 WP_173107998.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  KH172YL63_RS00035 (KH172YL63_00070) gyrA 7130..9664 (+) 2535 WP_173104258.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 43165.31 Da        Isoelectric Point: 7.0431

>NTDB_id=79318 KH172YL63_RS00020 WP_173104256.1 3645..4763(+) (recF) [Bacillus sp. KH172YL63]
MYIEQLELRNYRNYESIDVTFENKVNVILGENAQGKTNIMESIYVLAMAKSHRTSNDKDLIRWDEEYAKIKGRIQKYNGS
LPLELILSKKGKKAKSNHLEQSKLSQYVGNMNVVMFAPEDLHLVKGSPQVRRRFIDMEIGQVSPVYLHDISLYQKILQQR
NHYLKQLQTRKQKDQTMLDVLTEQFIEMAVKITKKRFEFVQLLESWAKPIHSGISRNLETLEILYKPSLGVSDSQEWSKM
VDIYEQKFNDIREREIDRGVTLVGPHRDDLQFIVNGRDVQTFGSQGQQRTTALSVKLAEIELIHSEIKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTNVDGIDHQTLNEATTFEVEAGSMKRVK

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=79318 KH172YL63_RS00020 WP_173104256.1 3645..4763(+) (recF) [Bacillus sp. KH172YL63]
ATGTACATTGAACAGTTAGAGTTGAGGAACTATCGAAATTATGAATCGATCGACGTGACGTTCGAGAATAAAGTGAACGT
CATCCTTGGGGAAAATGCCCAGGGGAAGACGAATATCATGGAGTCTATCTATGTATTGGCTATGGCCAAGTCCCACCGCA
CGTCAAATGACAAAGATTTAATCCGCTGGGACGAGGAATATGCTAAAATAAAAGGTAGGATACAGAAGTATAATGGTTCA
TTGCCACTTGAGCTTATTCTTTCGAAAAAAGGGAAAAAAGCGAAGAGCAATCACTTGGAACAGTCCAAGCTGAGCCAGTA
TGTCGGCAATATGAATGTAGTCATGTTCGCACCTGAGGATCTCCACTTAGTAAAAGGGAGCCCTCAGGTAAGGCGTCGTT
TTATCGATATGGAAATCGGACAGGTATCACCTGTTTATTTACATGATATCAGCCTTTATCAAAAAATATTACAGCAGCGG
AATCATTATCTGAAACAGTTGCAAACGCGAAAACAAAAAGACCAGACGATGCTTGACGTCCTGACGGAGCAGTTTATCGA
GATGGCGGTGAAAATCACCAAAAAGCGGTTCGAATTCGTTCAGCTTCTCGAAAGTTGGGCAAAACCGATCCATTCGGGGA
TCTCAAGGAACTTAGAAACGCTCGAAATCTTATATAAACCGTCCCTGGGCGTATCAGATAGTCAAGAATGGTCGAAAATG
GTAGATATATACGAACAGAAATTCAATGATATCCGTGAACGGGAAATCGACCGGGGTGTGACACTGGTAGGTCCCCATAG
GGATGATCTGCAATTCATCGTGAACGGCCGGGATGTCCAGACATTTGGATCACAGGGGCAGCAACGGACGACGGCCCTTT
CTGTGAAGCTCGCTGAAATCGAGCTGATTCATTCTGAAATCAAAGAATATCCCATCTTACTTCTTGATGATGTTTTGTCT
GAACTGGATGATTATCGTCAATCCCACTTACTCAATACCATTCAGGGGAAAGTCCAGACGTTCGTCACGACAACAAACGT
GGATGGTATCGATCACCAAACCTTAAACGAGGCGACCACATTCGAAGTGGAAGCCGGATCAATGAAAAGAGTGAAATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6F8TLP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

71.739

98.925

0.71

Multiple sequence alignment