Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PVK35_RS03325 Genome accession   NZ_CP118442
Coordinates   481601..482842 (-) Length   413 a.a.
NCBI ID   WP_274799054.1    Uniprot ID   -
Organism   Aeromonas caviae strain CYEY0630     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 476601..487842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVK35_RS03295 (PVK35_03295) - 477395..478579 (+) 1185 WP_274799053.1 tetratricopeptide repeat protein -
  PVK35_RS03300 (PVK35_03300) mutT 478588..478992 (+) 405 WP_191967205.1 8-oxo-dGTP diphosphatase MutT -
  PVK35_RS03305 (PVK35_03305) yacG 479050..479244 (-) 195 WP_039040499.1 DNA gyrase inhibitor YacG -
  PVK35_RS03310 (PVK35_03310) zapD 479255..479977 (-) 723 WP_010675825.1 cell division protein ZapD -
  PVK35_RS03315 (PVK35_03315) coaE 480015..480629 (-) 615 WP_239054132.1 dephospho-CoA kinase -
  PVK35_RS03320 (PVK35_03320) pilD 480648..481523 (-) 876 WP_239054131.1 A24 family peptidase Machinery gene
  PVK35_RS03325 (PVK35_03325) pilC 481601..482842 (-) 1242 WP_274799054.1 type II secretion system F family protein Machinery gene
  PVK35_RS03330 (PVK35_03330) pilB 482970..484676 (-) 1707 WP_274799055.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  PVK35_RS03335 (PVK35_03335) - 484680..485120 (-) 441 WP_274799056.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  PVK35_RS03340 (PVK35_03340) nadC 485431..486294 (-) 864 WP_128296228.1 carboxylating nicotinate-nucleotide diphosphorylase -
  PVK35_RS03345 (PVK35_03345) - 486298..486768 (-) 471 WP_010675818.1 retropepsin-like aspartic protease -
  PVK35_RS03350 (PVK35_03350) ampD 486897..487469 (+) 573 WP_239054130.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45465.39 Da        Isoelectric Point: 9.9380

>NTDB_id=792591 PVK35_RS03325 WP_274799054.1 481601..482842(-) (pilC) [Aeromonas caviae strain CYEY0630]
MATLAQKRNAPKKVFSYRWHGVNRKGQKVSGELQADSITTVKAELRKQGVNVTRVSKQSQGLFSKSGAKIKPMDIAVISR
QITTMLSAGVPLVQSLQIIARGHEKAAVRELIGQIAADVETGTPLSEALRRHPRHFDDLYCDLVEAGEQSGALETIYDRI
AIYREKNEALKSKIKKAMFYPSMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPAFTRFVIAISRFMQEWWYAIFGGAA
LAVFLYVRAWRKSQKVRDNTDKFILTIPVVGNILHKAAMARFARTLSTTFSAGIPLVDALVSAAGASGNYVYRTATMAIR
NEVVAGMQINVAMRTVDLFPDMVTQMVMIGEESGAIDDMLSKVAAIFEQEVDDMVDGLTSLLEPIIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=792591 PVK35_RS03325 WP_274799054.1 481601..482842(-) (pilC) [Aeromonas caviae strain CYEY0630]
ATGGCCACATTAGCTCAAAAACGCAACGCACCGAAAAAAGTCTTCTCCTACCGCTGGCACGGCGTCAACCGCAAGGGACA
GAAGGTCTCCGGCGAGCTGCAAGCCGACAGCATCACCACCGTCAAGGCCGAGCTGCGCAAGCAGGGCGTCAACGTCACCA
GGGTCAGCAAGCAGAGCCAGGGGCTCTTCTCCAAGAGCGGCGCCAAGATCAAGCCGATGGACATCGCCGTCATCTCCCGC
CAGATCACTACCATGCTCTCCGCCGGCGTGCCTCTGGTGCAGAGTCTTCAGATCATTGCTCGCGGCCACGAGAAAGCGGC
TGTGCGCGAGCTCATCGGCCAGATCGCCGCCGATGTGGAAACAGGCACCCCGCTCTCGGAGGCGTTGCGCCGCCATCCTC
GCCACTTCGACGACCTCTATTGCGACCTAGTCGAGGCCGGGGAGCAATCCGGTGCCCTGGAGACCATCTACGACCGTATC
GCCATCTACCGCGAGAAGAACGAAGCCCTCAAATCCAAGATCAAGAAGGCCATGTTCTATCCGTCCATGGTCATTCTGGT
GGCCATCGTCGTCACCTCCATCCTGCTGCTCTTCGTCATTCCCCAGTTCGAGGATATCTTCAAGAGCTTCGGTGCCGAGC
TGCCCGCCTTTACCCGGTTCGTCATCGCCATCTCCCGCTTCATGCAGGAGTGGTGGTACGCCATCTTTGGCGGCGCGGCT
CTCGCCGTCTTCCTCTATGTGCGGGCCTGGCGAAAATCCCAGAAGGTCAGGGACAACACGGACAAGTTCATCCTCACCAT
TCCCGTGGTGGGCAACATACTGCACAAGGCTGCCATGGCCCGTTTTGCCCGCACCCTCTCCACCACCTTCTCCGCCGGTA
TCCCACTGGTGGATGCCCTGGTCTCGGCGGCCGGAGCATCGGGCAACTATGTCTATCGCACTGCGACCATGGCCATTCGC
AACGAGGTGGTGGCCGGCATGCAGATCAACGTCGCCATGCGCACCGTGGATCTTTTCCCCGACATGGTGACCCAGATGGT
GATGATCGGTGAGGAATCCGGCGCCATCGACGACATGCTCTCCAAGGTCGCCGCCATTTTCGAACAGGAAGTGGACGACA
TGGTCGACGGCCTCACCAGCCTGCTCGAACCCATCATAATGGTGGTGCTCGGGGTGCTGGTCGGCGGCATGGTCGTGGCC
ATGTACCTCCCCATTTTCAAGCTGGGCTCTGTGATACACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.566

95.884

0.542
  pilC Legionella pneumophila strain ERS1305867

52.099

98.063

0.511
  pilC Acinetobacter baylyi ADP1

50.971

99.758

0.508
  pilC Acinetobacter baumannii D1279779

52.369

97.094

0.508
  pilC Vibrio cholerae strain A1552

47.368

96.61

0.458
  pilC Vibrio campbellii strain DS40M4

45.113

96.61

0.436
  pilG Neisseria meningitidis 44/76-A

41.602

93.705

0.39
  pilG Neisseria gonorrhoeae MS11

41.602

93.705

0.39
  pilC Thermus thermophilus HB27

38.75

96.852

0.375