Detailed information NTG0792590

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PVK35_RS03320
• Genome accession: NZ_CP118442
• Coordinates: 480648..481523 (-)
• Length: 291 a.a.
• NCBI ID: WP_239054131.1
• Uniprot ID: -
• Organism: Aeromonas caviae strain CYEY0630
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 475648..486523

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PVK35_RS03295 (PVK35_03295)	-	477395..478579 (+)	1185	WP_274799053.1	tetratricopeptide repeat protein	-
PVK35_RS03300 (PVK35_03300)	mutT	478588..478992 (+)	405	WP_191967205.1	8-oxo-dGTP diphosphatase MutT	-
PVK35_RS03305 (PVK35_03305)	yacG	479050..479244 (-)	195	WP_039040499.1	DNA gyrase inhibitor YacG	-
PVK35_RS03310 (PVK35_03310)	zapD	479255..479977 (-)	723	WP_010675825.1	cell division protein ZapD	-
PVK35_RS03315 (PVK35_03315)	coaE	480015..480629 (-)	615	WP_239054132.1	dephospho-CoA kinase	-
PVK35_RS03320 (PVK35_03320)	pilD	480648..481523 (-)	876	WP_239054131.1	A24 family peptidase	Machinery gene
PVK35_RS03325 (PVK35_03325)	pilC	481601..482842 (-)	1242	WP_274799054.1	type II secretion system F family protein	Machinery gene
PVK35_RS03330 (PVK35_03330)	pilB	482970..484676 (-)	1707	WP_274799055.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
PVK35_RS03335 (PVK35_03335)	-	484680..485120 (-)	441	WP_274799056.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
PVK35_RS03340 (PVK35_03340)	nadC	485431..486294 (-)	864	WP_128296228.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 32055.19 Da
• Isoelectric Point: 6.8280

>NTDB_id=792590 PVK35_RS03320 WP_239054131.1 480648..481523(-) (pilD) [Aeromonas caviae strain CYEY0630]
MVPLIEMAQGLPWLYLSLIFLFSLMVGSFLNVVIHRLPIMMERAWHAEYSDYFGDGEETPPATGRYNLMVPRSRCPHCDH
PIGALENIPLLSWLWLRGRCRNCHAPISARYPLVELLTALLSVSVAAALAPGWGTLAALLLTWTLVALTFIDLDKMLLPD
QLTLPLLWGGLLFNLAGGFVPLADGVVGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSS
LAGAIIGIGLILLRNHHQGKPIPFGPYLAIAGWITLLWGDSITRWYLDVVL

Nucleotide

• Length: 876 bp

>NTDB_id=792590 PVK35_RS03320 WP_239054131.1 480648..481523(-) (pilD) [Aeromonas caviae strain CYEY0630]
ATGGTGCCTTTGATCGAAATGGCCCAGGGCTTGCCCTGGCTCTATCTCTCCTTGATTTTCCTTTTCTCCCTGATGGTGGG
CAGCTTCCTGAACGTGGTGATCCATCGCCTGCCCATCATGATGGAGCGGGCCTGGCATGCCGAATACAGCGACTATTTCG
GTGACGGTGAAGAGACTCCTCCTGCAACCGGACGATACAACCTCATGGTACCTCGCTCCCGCTGCCCCCACTGCGACCAC
CCCATAGGGGCGCTGGAGAACATTCCCCTGCTGAGCTGGCTATGGCTCAGGGGGCGCTGCCGCAACTGCCACGCCCCCAT
TTCGGCTCGCTATCCCCTGGTTGAGCTGCTCACCGCCCTGCTGTCGGTCTCGGTAGCAGCCGCGCTTGCCCCCGGCTGGG
GCACCCTTGCCGCTCTGTTGCTCACCTGGACATTGGTCGCACTGACCTTCATCGACCTGGACAAGATGCTCTTGCCGGAT
CAGCTCACCCTGCCCCTGCTCTGGGGTGGCCTGCTGTTCAATCTGGCGGGCGGTTTCGTGCCCCTGGCCGATGGGGTGGT
CGGCGCCATGGCTGGTTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCT
ACGGCGACTTCAAACTGCTGGCGGCACTGGGCGCTTGGCTCGGCTGGCAAGCCTTGCCCATCGTGCTGCTGCTCTCTTCG
CTGGCGGGCGCCATCATCGGCATCGGTCTCATCCTGCTGCGCAACCACCACCAGGGCAAACCCATTCCCTTTGGCCCCTA
TCTCGCCATCGCGGGCTGGATAACGCTGCTGTGGGGCGATAGCATTACCCGCTGGTATCTTGATGTCGTGCTCTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (140-248)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.069	98.969	0.594
pilD	Vibrio campbellii strain DS40M4	56.897	99.656	0.567
pilD	Acinetobacter baumannii D1279779	51.971	95.876	0.498
pilD	Acinetobacter nosocomialis M2	51.971	95.876	0.498
pilD	Neisseria gonorrhoeae MS11	51.341	89.691	0.46