Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   PVE41_RS06055 Genome accession   NZ_CP118438
Coordinates   1259099..1259524 (+) Length   141 a.a.
NCBI ID   WP_072608924.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 1908-10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1254099..1264524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVE41_RS06040 (PVE41_06040) pdhR 1256169..1256936 (-) 768 WP_131069648.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -
  PVE41_RS06045 (PVE41_06045) ampD 1257324..1257896 (-) 573 WP_072608922.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  PVE41_RS06050 (PVE41_06050) nadC 1257989..1258876 (+) 888 WP_072608923.1 carboxylating nicotinate-nucleotide diphosphorylase -
  PVE41_RS06055 (PVE41_06055) pilA 1259099..1259524 (+) 426 WP_072608924.1 pilin Machinery gene
  PVE41_RS06060 (PVE41_06060) pilB 1259529..1261217 (+) 1689 WP_080538712.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PVE41_RS06065 (PVE41_06065) pilC 1261265..1262491 (+) 1227 WP_011079549.1 type II secretion system F family protein Machinery gene
  PVE41_RS06070 (PVE41_06070) pilD 1262585..1263454 (+) 870 WP_131069647.1 A24 family peptidase Machinery gene
  PVE41_RS06075 (PVE41_06075) coaE 1263456..1264064 (+) 609 WP_039554617.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 14704.89 Da        Isoelectric Point: 9.4539

>NTDB_id=792525 PVE41_RS06055 WP_072608924.1 1259099..1259524(+) (pilA) [Vibrio vulnificus strain 1908-10]
MKKLNKTKKQQGFTLIELMIVVAVIGVLAAIAVPQYQKYVAKSEAATALASITGHRTNVETYVLENGSFPSTSGALAIPT
SPIGVITYENPTSAAGDIKFSFNSSGVSPDIVSKHVTLSRTSAGGWSCATDVATDLKPKGC

Nucleotide


Download         Length: 426 bp        

>NTDB_id=792525 PVE41_RS06055 WP_072608924.1 1259099..1259524(+) (pilA) [Vibrio vulnificus strain 1908-10]
ATGAAGAAATTAAACAAAACCAAGAAACAACAAGGTTTTACCTTGATTGAATTAATGATAGTGGTGGCGGTAATTGGCGT
GCTCGCAGCAATTGCAGTACCCCAGTATCAAAAATACGTTGCTAAAAGTGAAGCCGCAACCGCTCTAGCTTCGATAACAG
GTCACCGAACTAACGTTGAAACATATGTACTAGAAAATGGTTCTTTCCCATCAACTTCAGGCGCTCTAGCAATACCTACT
TCTCCTATCGGAGTTATTACATACGAAAACCCTACTAGTGCAGCTGGTGATATTAAATTTAGTTTCAACTCATCTGGGGT
TAGCCCAGACATCGTATCGAAACACGTGACACTTTCAAGAACTTCTGCTGGTGGTTGGTCATGTGCAACTGATGTGGCAA
CAGATCTAAAACCTAAAGGCTGTTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(41-141)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Vibrio cholerae strain A1552

46.358

100

0.496
  pilA Vibrio cholerae C6706

46.358

100

0.496
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

46.358

100

0.496
  pilA Pseudomonas aeruginosa PAK

43.537

100

0.454
  pilA Acinetobacter baumannii strain A118

43.704

95.745

0.418
  pilA/pilAI Pseudomonas stutzeri DSM 10701

42.143

99.291

0.418
  pilA Vibrio parahaemolyticus RIMD 2210633

42.537

95.035

0.404
  pilA/pilAII Pseudomonas stutzeri DSM 10701

39.416

97.163

0.383