Detailed information NTG0792528

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PVE41_RS06070
• Genome accession: NZ_CP118438
• Coordinates: 1262585..1263454 (+)
• Length: 289 a.a.
• NCBI ID: WP_131069647.1
• Uniprot ID: -
• Organism: Vibrio vulnificus strain 1908-10
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1257585..1268454

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PVE41_RS06050 (PVE41_06050)	nadC	1257989..1258876 (+)	888	WP_072608923.1	carboxylating nicotinate-nucleotide diphosphorylase	-
PVE41_RS06055 (PVE41_06055)	pilA	1259099..1259524 (+)	426	WP_072608924.1	pilin	Machinery gene
PVE41_RS06060 (PVE41_06060)	pilB	1259529..1261217 (+)	1689	WP_080538712.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PVE41_RS06065 (PVE41_06065)	pilC	1261265..1262491 (+)	1227	WP_011079549.1	type II secretion system F family protein	Machinery gene
PVE41_RS06070 (PVE41_06070)	pilD	1262585..1263454 (+)	870	WP_131069647.1	A24 family peptidase	Machinery gene
PVE41_RS06075 (PVE41_06075)	coaE	1263456..1264064 (+)	609	WP_039554617.1	dephospho-CoA kinase	-
PVE41_RS06080 (PVE41_06080)	zapD	1264097..1264837 (+)	741	WP_011079546.1	cell division protein ZapD	-
PVE41_RS06085 (PVE41_06085)	yacG	1264900..1265094 (+)	195	WP_026060801.1	DNA gyrase inhibitor YacG	-
PVE41_RS06090 (PVE41_06090)	rplS	1265319..1265672 (-)	354	WP_011079544.1	50S ribosomal protein L19	-
PVE41_RS06095 (PVE41_06095)	trmD	1265714..1266463 (-)	750	WP_011079543.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
PVE41_RS06100 (PVE41_06100)	rimM	1266491..1267039 (-)	549	WP_011079542.1	ribosome maturation factor RimM	-
PVE41_RS06105 (PVE41_06105)	rpsP	1267055..1267303 (-)	249	WP_011079541.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32290.42 Da
• Isoelectric Point: 7.5685

>NTDB_id=792528 PVE41_RS06070 WP_131069647.1 1262585..1263454(+) (pilD) [Vibrio vulnificus strain 1908-10]
MDALQYYPWLYIGLASLFGLLVGSFLNVVIYRLPKIMELEWRQECAESFPEYKISPPTKTLTLSTPRSSCPSCHTPIRVR
DNIPVFSWLALRGKCHHCQTKISARYPFVEALSAFLCGLVTWKFGYAPITVALIGFTLVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALLEISPVSLQDSVIGTMAGYLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGWQYLPMIILLSSVVGL
IFGLIQLRLQKQGIEMAFPFGPYLAIAGWVALMWGDSLMSWYLNYLIGA

Nucleotide

• Length: 870 bp

>NTDB_id=792528 PVE41_RS06070 WP_131069647.1 1262585..1263454(+) (pilD) [Vibrio vulnificus strain 1908-10]
ATGGACGCGTTACAATACTACCCTTGGCTTTATATTGGTTTAGCTTCCCTGTTTGGCTTACTGGTAGGCAGCTTTCTTAA
CGTCGTCATCTACCGCCTACCAAAAATAATGGAACTGGAGTGGCGCCAAGAGTGTGCAGAGTCCTTTCCTGAATACAAAA
TATCACCGCCGACAAAAACCCTAACATTAAGCACGCCGCGTTCAAGTTGCCCTTCGTGCCATACCCCAATACGAGTTCGA
GATAATATTCCTGTCTTTAGTTGGCTAGCTCTAAGAGGAAAATGTCACCATTGCCAGACGAAAATCAGTGCTCGCTATCC
TTTTGTTGAAGCACTGAGCGCCTTTTTGTGCGGCCTAGTCACTTGGAAGTTCGGTTATGCACCGATTACCGTAGCACTGA
TTGGTTTTACTTTGGTGTTGATCGCCGCTACCTTCATCGACTTAGATACCATGCTACTGCCTGATCAGCTGACACTGCCG
CTGACGTGGGCAGGCATCGCGCTAGCGTTACTAGAGATAAGCCCAGTATCTCTGCAGGATTCAGTGATCGGTACGATGGC
AGGCTATCTCTGCCTTTGGAGCGTTTATCACCTTTTCCGCTTGCTGACAGGGAAAGAAGGCATGGGTTACGGAGACTTTA
AATTGCTTGCGGCACTTGGAGCTTGGCTCGGCTGGCAATACCTACCGATGATCATCTTACTCTCTTCGGTTGTCGGGCTG
ATCTTTGGTCTCATTCAACTCAGATTGCAAAAACAAGGCATTGAGATGGCTTTTCCATTTGGGCCTTATCTGGCCATTGC
TGGTTGGGTCGCCTTGATGTGGGGAGATAGCTTGATGTCTTGGTATCTCAACTATCTTATAGGGGCATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	76.736	99.654	0.765
pilD	Vibrio cholerae strain A1552	70.833	99.654	0.706
pilD	Acinetobacter nosocomialis M2	55.235	95.848	0.529
pilD	Acinetobacter baumannii D1279779	53.986	95.502	0.516
pilD	Neisseria gonorrhoeae MS11	47.273	95.156	0.45