Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PU634_RS01540 Genome accession   NZ_CP118224
Coordinates   322526..323752 (-) Length   408 a.a.
NCBI ID   WP_306762326.1    Uniprot ID   A0AA50KQ82
Organism   Oceanimonas pelagia strain NTOU-MSR1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 317526..328752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PU634_RS01520 (PU634_01520) - 318235..319725 (-) 1491 WP_306762322.1 NAD-dependent succinate-semialdehyde dehydrogenase -
  PU634_RS01525 (PU634_01525) trmB 319928..320644 (+) 717 WP_306762323.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  PU634_RS01530 (PU634_01530) coaE 320719..321345 (-) 627 WP_306762324.1 dephospho-CoA kinase -
  PU634_RS01535 (PU634_01535) pilD 321342..322196 (-) 855 WP_306762325.1 A24 family peptidase Machinery gene
  PU634_RS01540 (PU634_01540) pilC 322526..323752 (-) 1227 WP_306762326.1 type II secretion system F family protein Machinery gene
  PU634_RS01545 (PU634_01545) pilB 323778..325490 (-) 1713 WP_306762327.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PU634_RS17215 - 325497..325940 (-) 444 WP_371319616.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  PU634_RS01555 (PU634_01555) nadC 326234..327088 (-) 855 WP_306762328.1 carboxylating nicotinate-nucleotide diphosphorylase -
  PU634_RS01560 (PU634_01560) - 327138..327656 (-) 519 WP_306762329.1 TIGR02281 family clan AA aspartic protease -
  PU634_RS01565 (PU634_01565) ampD 327729..328271 (+) 543 WP_306762330.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44983.99 Da        Isoelectric Point: 10.0450

>NTDB_id=791100 PU634_RS01540 WP_306762326.1 322526..323752(-) (pilC) [Oceanimonas pelagia strain NTOU-MSR1]
MASAKDFRVYPYKWEGINRKGQKVSGFVQAADAKAARRELQRQGVNALKVRRKSQGLLARYKDAVKPADIAIITRQIATM
LGAGVPLVQTLQIIARSYEKPSIRELAGTLAADVEGGTPLSDALRKHPRHFDDLYCDLVHSGEQTGALEHIFDRIAIYRE
KAEAIKSKIRKALFYPAMVILVAMVVTAILLLFVIPQFEEIFAGFGATLPLFTQVVINLSRWLQQYWLYILAAMAVGGWL
YVRAWRSSQKVRDATDRFVLRLPIVGKILHKAALARFARTLATTFSAGIPLVEGLLSSAGAAGNVVYRQAVLQLRDEVIA
GMQMNIAMRATGLFPDMVVQMVMIGEESGAIDDMMHKVASIYEREVDDAVDGLTSLIEPLIMVVLGVLVGGLVIAMYLPI
FNLGSVVR

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=791100 PU634_RS01540 WP_306762326.1 322526..323752(-) (pilC) [Oceanimonas pelagia strain NTOU-MSR1]
ATGGCAAGCGCAAAGGACTTTCGGGTTTATCCCTATAAATGGGAAGGCATTAACCGCAAGGGCCAGAAGGTCTCGGGCTT
TGTGCAGGCGGCCGATGCCAAGGCCGCCCGGCGCGAGCTGCAGCGCCAGGGCGTAAATGCCCTCAAGGTCAGACGCAAGA
GCCAGGGCCTGCTGGCCCGCTACAAGGACGCCGTCAAGCCCGCCGACATCGCCATCATCACCCGGCAGATCGCCACCATG
CTGGGCGCCGGCGTGCCCCTGGTGCAAACCCTGCAGATCATCGCCCGCTCCTACGAGAAACCCAGCATTCGCGAGCTGGC
CGGCACCCTGGCCGCCGATGTGGAAGGCGGCACGCCGCTGTCCGACGCCCTGAGAAAACACCCGCGCCACTTTGACGATC
TCTACTGCGATCTGGTGCACTCCGGCGAACAGACCGGGGCGCTGGAGCATATTTTTGACCGCATCGCCATCTACCGGGAA
AAGGCCGAGGCCATCAAGTCGAAAATCCGCAAGGCCCTGTTCTATCCGGCCATGGTGATCCTGGTGGCCATGGTGGTGAC
CGCCATTCTGCTGCTGTTCGTGATCCCGCAGTTTGAGGAGATCTTTGCCGGCTTTGGCGCCACCCTGCCGCTGTTCACCC
AGGTGGTGATCAACCTGTCGCGCTGGCTGCAGCAATACTGGCTCTATATTCTGGCCGCCATGGCGGTGGGCGGCTGGCTG
TATGTGCGGGCCTGGCGCAGCTCGCAAAAGGTGCGCGACGCCACCGACCGCTTTGTACTGCGCCTGCCCATTGTCGGCAA
GATCCTGCACAAGGCCGCCCTGGCCCGCTTTGCCCGCACCCTGGCCACCACCTTTTCCGCCGGCATTCCGCTGGTGGAAG
GTTTGCTGTCGTCTGCCGGCGCCGCCGGCAACGTGGTGTACCGCCAGGCGGTGCTGCAGCTGCGCGACGAGGTGATCGCC
GGCATGCAGATGAACATCGCCATGCGCGCCACCGGGCTGTTTCCGGACATGGTGGTGCAGATGGTCATGATCGGCGAGGA
GTCCGGTGCCATCGACGACATGATGCACAAGGTGGCCAGCATTTATGAACGGGAGGTGGACGACGCCGTGGACGGCCTCA
CCAGCCTGATTGAGCCGCTGATCATGGTGGTGCTGGGGGTGCTGGTTGGCGGCCTGGTCATTGCCATGTATCTTCCCATC
TTTAACCTGGGCAGCGTGGTACGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

53.056

100

0.532
  pilC Pseudomonas stutzeri DSM 10701

53.283

97.059

0.517
  pilC Acinetobacter baumannii D1279779

52.645

97.304

0.512
  pilC Vibrio cholerae strain A1552

48.655

100

0.488
  pilC Legionella pneumophila strain ERS1305867

49.242

97.059

0.478
  pilC Vibrio campbellii strain DS40M4

47.619

97.794

0.466
  pilG Neisseria gonorrhoeae MS11

42.892

100

0.436
  pilG Neisseria meningitidis 44/76-A

41.889

100

0.424
  pilC Thermus thermophilus HB27

39.401

98.284

0.387