Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   PU634_RS01535 Genome accession   NZ_CP118224
Coordinates   321342..322196 (-) Length   284 a.a.
NCBI ID   WP_306762325.1    Uniprot ID   A0AA50KP71
Organism   Oceanimonas pelagia strain NTOU-MSR1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 316342..327196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PU634_RS01515 (PU634_01515) - 316797..318209 (-) 1413 WP_306762321.1 aminotransferase -
  PU634_RS01520 (PU634_01520) - 318235..319725 (-) 1491 WP_306762322.1 NAD-dependent succinate-semialdehyde dehydrogenase -
  PU634_RS01525 (PU634_01525) trmB 319928..320644 (+) 717 WP_306762323.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  PU634_RS01530 (PU634_01530) coaE 320719..321345 (-) 627 WP_306762324.1 dephospho-CoA kinase -
  PU634_RS01535 (PU634_01535) pilD 321342..322196 (-) 855 WP_306762325.1 A24 family peptidase Machinery gene
  PU634_RS01540 (PU634_01540) pilC 322526..323752 (-) 1227 WP_306762326.1 type II secretion system F family protein Machinery gene
  PU634_RS01545 (PU634_01545) pilB 323778..325490 (-) 1713 WP_306762327.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PU634_RS17215 - 325497..325940 (-) 444 WP_371319616.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  PU634_RS01555 (PU634_01555) nadC 326234..327088 (-) 855 WP_306762328.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 284 a.a.        Molecular weight: 31407.50 Da        Isoelectric Point: 7.8417

>NTDB_id=791099 PU634_RS01535 WP_306762325.1 321342..322196(-) (pilD) [Oceanimonas pelagia strain NTOU-MSR1]
MTQLLDNTALLYIVIPLLGLLVGSFLNVVIHRLPLMMQREWQRECAGLNNQPVADDAPFNLCVPRSRCPHCQHALAARDN
IPVLSWLWLKGRCRYCNTPIARRYPLVELASALIAALALWRFGPGSQLLAALVFSWLLLCMTLIDLDHLLLPDDLTLPLL
WLGLLLNVGELFVSLPSAVIGAAAGYGILWSLYWLFKLATGKEGMGYGDFKLLAAIGAWFGWQSLLPVLLLASFTGAALG
LGLMALRRLGEDRVLPFGPALALGGWCYLMWGTEVVNLYWRLAL

Nucleotide


Download         Length: 855 bp        

>NTDB_id=791099 PU634_RS01535 WP_306762325.1 321342..322196(-) (pilD) [Oceanimonas pelagia strain NTOU-MSR1]
ATGACCCAACTGCTCGACAATACCGCTCTGCTTTATATTGTGATCCCCCTGCTGGGGTTGCTGGTGGGCAGCTTTCTTAA
TGTAGTGATCCACCGGTTGCCGCTGATGATGCAGCGGGAGTGGCAACGGGAGTGCGCCGGGCTGAATAATCAGCCAGTCG
CCGACGACGCCCCCTTTAACCTGTGCGTGCCCCGCTCCCGCTGCCCGCACTGCCAGCATGCCCTGGCCGCCAGAGACAAT
ATTCCCGTGCTCAGCTGGCTGTGGCTGAAAGGCCGCTGCCGCTACTGCAACACCCCCATCGCCAGGCGCTACCCGCTGGT
GGAACTGGCCTCGGCGCTGATCGCCGCCCTGGCCCTGTGGCGCTTTGGCCCGGGCTCTCAGTTGCTGGCGGCACTGGTGT
TCAGCTGGCTGCTGCTGTGCATGACCCTGATCGACCTGGATCACCTGCTGCTGCCCGACGATCTGACCCTGCCGCTGTTG
TGGCTGGGGCTGCTGCTCAATGTGGGCGAGCTGTTCGTATCGCTGCCATCGGCGGTGATCGGCGCCGCCGCCGGCTACGG
CATTCTGTGGAGCCTGTACTGGCTGTTCAAGCTGGCCACCGGCAAGGAAGGCATGGGCTACGGCGACTTCAAGCTGCTGG
CCGCCATCGGCGCCTGGTTCGGCTGGCAGAGCCTGCTGCCGGTACTGCTGCTGGCCTCCTTTACCGGCGCCGCGCTGGGG
CTGGGGCTGATGGCCCTGCGCCGCCTGGGCGAAGACCGTGTGCTGCCCTTTGGCCCGGCCCTGGCCCTGGGCGGCTGGTG
TTATCTGATGTGGGGCACCGAGGTGGTCAACCTGTACTGGAGGCTGGCGTTATGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(132-241)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

53.558

94.014

0.504
  pilD Vibrio campbellii strain DS40M4

50

97.183

0.486
  pilD Acinetobacter baumannii D1279779

46.043

97.887

0.451
  pilD Acinetobacter nosocomialis M2

45.324

97.887

0.444
  pilD Neisseria gonorrhoeae MS11

48.016

88.732

0.426